Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03568 ATGAATGGCGAGGGGAAGGAAGCATTACAAGGGGCGAAGGAGAGAATGGTGTACATGTGGGGTTACCTCCCCGGAGCTCTGCCGCAGAGGACGCCGTTGTTGACGCCGGTGCTCGTTAGGGTTCCGGCGACTGGTTACTCATGGAGGGATGTTTGTGGTGGTGGTTGTGGATTCGCCATGGCTCTCTCCGAGCCAGGAAAGCTCATAACATGGGGTTCAACAGATGATCTAGGCCAAAGCTACCTCACATCTGGCAAGCACGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGCATCCATTGTAAAAGCTGCAGCTGGATGGGCACATTGTGTTGCTGTGACAGATAGTGGAGAAGTTTATACATGGGGATGGAAGGAATGTATTCCCTCTGGGAAGGTACTTGGTGAACCAACAACAGGGGTAAGTCCTGAAAAAGATGTAGCAGGAAGGCAGAGTTCATTCTTGACGGAGCAAGTGAGCCCTCGTCCTCAAGGCTCAAAATCCACAGGAGGAACTGCATCCAGTACCGGTGGAGAAGAGAGTACAAAGAGAAGGAGAGTATCTTCAGCAAAGCAAACAGCTGAAATCTCGTCATCCGATGATGATACTATGACAGCATTGCCATATCTTGTCACACTAAACCCAGGGGTAAGGATAACAAGTGTTGCTGCTGGTGGACGCCATACCCTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCCAGAGTACGTATGGTGTCCTCTCCTCATCTTGTTCCTTGTATTGATTCCTCTTCATTCGGTAAAGATATATCGGCATCACTGGCTCGAGGAAGCATGAGTTCAGAGGGACAAGGTTTTACAGTTCCTGGAAGTTATATAAAGGGTATTGCCTGTGGAGGTCGACACAGTGCAGTAATCACAGATGCTGGAGCTGTGCTTACATTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTAAGCCCGACTTGCGTATCTTCCTTGTTGGGTATCCGAATAGAGGGAGTTGCTGCAGGACTGTGGCATACTGTCTGTACATCTTCTGATGGCGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAGCTGGGAACTGGCACTGATCAAGCTGAGACTCTACCAAGGCTACTGGATTGTCCGAGCTTGGAAAATATGAATGTAAAGAGCATATCTTGTGGAGCTCGTCACACTGCTCTAATAACAGATAATGGAAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGCTTGGCCTTGGTGATGTGATTGACCGTAACATTCCTTCTGAAGTCACCATAGAAGGTTGTGTAGCTAAAAACATTGCTTGTGGTTGGTGGCATACTGTTCTTCTGGCCGAGTCACAAACTTGA 1431 0.4871 MNGEGKEALQGAKERMVYMWGYLPGALPQRTPLLTPVLVRVPATGYSWRDVCGGGCGFAMALSEPGKLITWGSTDDLGQSYLTSGKHGETPEPFPLPTEASIVKAAAGWAHCVAVTDSGEVYTWGWKECIPSGKVLGEPTTGVSPEKDVAGRQSSFLTEQVSPRPQGSKSTGGTASSTGGEESTKRRRVSSAKQTAEISSSDDDTMTALPYLVTLNPGVRITSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRMVSSPHLVPCIDSSSFGKDISASLARGSMSSEGQGFTVPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEGVAAGLWHTVCTSSDGDVYAFGGNQFGQLGTGTDQAETLPRLLDCPSLENMNVKSISCGARHTALITDNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNIACGWWHTVLLAESQT* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03568 476 PRINTS Chromosome condensation regulator RCC1 signature 224 240 IPR000408 -
Rops11g03568 476 PRINTS Chromosome condensation regulator RCC1 signature 419 440 IPR000408 -
Rops11g03568 476 PRINTS Chromosome condensation regulator RCC1 signature 102 115 IPR000408 -
Rops11g03568 476 PRINTS Chromosome condensation regulator RCC1 signature 359 377 IPR000408 -
Rops11g03568 476 MobiDBLite consensus disorder prediction 135 201 - -
Rops11g03568 476 SUPERFAMILY RCC1/BLIP-II 17 474 IPR009091 -
Rops11g03568 476 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 473 - -
Rops11g03568 476 Pfam Regulator of chromosome condensation (RCC1) repeat 102 126 - -
Rops11g03568 476 Pfam Regulator of chromosome condensation (RCC1) repeat 221 250 - -
Rops11g03568 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
Rops11g03568 476 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 304 314 IPR000408 -
Rops11g03568 476 Pfam Regulator of chromosome condensation (RCC1) repeat 423 471 IPR000408 -
Rops11g03568 476 Pfam Regulator of chromosome condensation (RCC1) repeat 318 365 IPR000408 -
Rops11g03568 476 Pfam Regulator of chromosome condensation (RCC1) repeat 369 420 IPR000408 -
Rops11g03568 476 Gene3D - 397 476 IPR009091 -
Rops11g03568 476 Gene3D - 170 396 IPR009091 -
Rops11g03568 476 Gene3D - 8 157 IPR009091 -
Rops11g03568 476 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 224 234 IPR000408 -
Rops11g03568 476 MobiDBLite consensus disorder prediction 147 180 - -
Rops11g03568 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 423 IPR000408 -
Rops11g03568 476 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 410 420 IPR000408 -
Rops11g03568 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Rops11g03568 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 424 474 IPR000408 -
Rops11g03568 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 238 317 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03568 Rops-Chr11 68106712 68114572 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03568 - - gmx:100778841 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03568 11 68106712 68114572 Rops11g03568 11 68106712 68114572 ECH
Rops11g03568 11 68106712 68114572 Rops9g00928 9 15043710 15049648 ECH
Rops11g03568 11 68106712 68114572 Rops9g00928 9 15043710 15049648 PCT