Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00871 ATGATGGAGGAGAGGGGCGGCGGCAGCGGCGTTGGGAGGATGAACACGAGGTTGTCGGACGTGGTTCTCGACTGCGTGATGCCGTACATCCACGACCCGAAGGACAGGGACGCGGTGTCTCAGGTGTGCCGGCGGTGGTACGAGCTTGATTCTCTAACTCGGAAGCACGTGACGATTGCGTTGTGCTACACCACCACGCCGGACAAGCTTCGCCGGCGGTTTCCTCACCTTGAGTCGTTGAAGCTGAAGGGGAAGCCGAGGGCGGCGATGTTCAACTTGATACCGGAGGATTGGGGAGGTTTCGTAACGCCTTGGGTTAAAGAGATTTCGAAGTACTTTGATTGTTTGAAGTCACTTCACTTTCGTCGTATGATTGTAACTGACTCTGATCTTCAGCATCTTGCAAGTTCACGAGGTCCCATACTTCAAGCTCTTAAGCTTGATAAGTGTTCTGGTTTCTCCACCGATGGACTTTACTATATTGGTCGATTTTGCAGGAATTTAAGAATCTTGTTTATGGAGGAAAGCCCAGTTGTTGAGAATGATGGTGACTGGCTCCATGAGCTTGCTTCGAATAATACAGTTCTTGAGCAGCTGAATTTTTACTTGACTGATATTGCCAATGTCAGAATTCAGGACCTTGAACTTATAGCCAAAAATTGCCCCAACTTAGTCTCTGTGAAAATTACGGATTGTGAAATTTTGCATCTGGTGAACTTCTTTCGATATGCAACTGCTCTTGAAGAATTTTGTGGAGGTTCCTACAATGAGGAACCGGAGAAGTACGCTGCTGTAACGTTACCAGCAAAGTTAAGTCGATTGGGTTTGACATATATTGGAAAGAATGAAATGCCAATTGTGTTCCCTTATGCAGCCTTGCTGAAAAAATTGGATCTTCTCTATGCTATGCTGGATACGGAAGATCATTGTATGTTAATCCAAAGGTGCCCCAACTTGGAAGTCCTTGAGTCAAGGAATGTAATTGGAGACAGAGGATTAGAAGTACTTGCTAGCTGTTGTAGGAGGCTGAAAAGGCTTAGGATTGAACGAGGTGATGACGATCAAGGAATGGAGGACGAAGAAGGTGTTGTTTCCCAGAGAGGACTAATTGCATTGTCACAGGGCTGTCCAGAACTTGAATACATGGCTGTTTATGTATCTGACATTACAAATGCATCACTAGAACACATTGGTACTCACTTGAAAAACCTTTGTGATTTTCGCCTTGTATTGCTAGACCGTGAGGAGAAAATAACTGATTTGCCACTTGACAACGGGGTGAGGGCTTTACTGAGAGGTTGTGACAAGCTCAGAAGATTTGCTCTGTATCTCAGACCTGGGGGCTTGACTGATGTAGGCCTCGGTTACATAGGGCAATACAGCCCAAACGTGAGATGGATGCTTCTTGGTTATGTGGGGGAGACTGATGCAGGGCTTTTGGAATTCTCTAAGGGCTGCCCCAGTCTTCAGAAACTTGAAATGAGAGGGTGTTCCTTCTTTAGTGAGTATGCACTTGCTGTTGCTGCAACTAGACTCACTTCTCTAAGGTATCTATGGGTGCAAGGGTATGGAGCATCTCCATCTGGACGTGATCTTTTGGCAATGGCACGCCCCTATTGGAACATTGAGTTGATTCCTTCTAGACTTGTGGGTAATAATCACCCTGGAGAGCCTGTAGTTGTTGAGCATCCAGCTCATATTCTTGCATATTACTCCCTTGCTGGGCCAAGATCAGATTTTCCAGATACTGTTATACCTTTGGATCCTGCAGCAGAATATGTTGACACGTAA 1791 0.459 MMEERGGGSGVGRMNTRLSDVVLDCVMPYIHDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPDKLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVKEISKYFDCLKSLHFRRMIVTDSDLQHLASSRGPILQALKLDKCSGFSTDGLYYIGRFCRNLRILFMEESPVVENDGDWLHELASNNTVLEQLNFYLTDIANVRIQDLELIAKNCPNLVSVKITDCEILHLVNFFRYATALEEFCGGSYNEEPEKYAAVTLPAKLSRLGLTYIGKNEMPIVFPYAALLKKLDLLYAMLDTEDHCMLIQRCPNLEVLESRNVIGDRGLEVLASCCRRLKRLRIERGDDDQGMEDEEGVVSQRGLIALSQGCPELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATRLTSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRLVGNNHPGEPVVVEHPAHILAYYSLAGPRSDFPDTVIPLDPAAEYVDT* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00871 596 CDD F-box_AtTIR1-like 17 54 - -
Rops9g00871 596 Gene3D Ribonuclease Inhibitor 55 591 IPR032675 -
Rops9g00871 596 Gene3D - 11 54 - -
Rops9g00871 596 SMART LRR_CC_2 113 137 IPR006553 -
Rops9g00871 596 SMART LRR_CC_2 376 400 IPR006553 -
Rops9g00871 596 SMART LRR_CC_2 139 164 IPR006553 -
Rops9g00871 596 SMART LRR_CC_2 486 511 IPR006553 -
Rops9g00871 596 SMART LRR_CC_2 316 339 IPR006553 -
Rops9g00871 596 SMART LRR_CC_2 434 460 IPR006553 -
Rops9g00871 596 SMART LRR_CC_2 221 240 IPR006553 -
Rops9g00871 596 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 19 248 - -
Rops9g00871 596 FunFam F-box/LRR-repeat protein 4 15 54 - -
Rops9g00871 596 Pfam Transport inhibitor response 1 protein domain 75 121 IPR041101 -
Rops9g00871 596 SUPERFAMILY F-box domain 16 50 IPR036047 GO:0005515
Rops9g00871 596 FunFam Coronatine-insensitive protein 1 55 590 - -
Rops9g00871 596 Pfam F-box 16 56 IPR041567 -
Rops9g00871 596 SUPERFAMILY RNI-like 88 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00871 Rops-Chr9 14208965 14213139 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00871 K13463 - gmx:100793081 1080.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00871 9 14208965 14213139 Rops9g00871 9 14208965 14213139 ECH
Rops11g03993 11 74427568 74431382 Rops9g00871 9 14208965 14213139 PCT