Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03993 ATGATGGAAGATAATCGGAACATGAAGAGAAACCGCGTGGTGGATGTGGTTATAGACTGTGTTATACCTTATATCCATGACCCAAAAGATCGTGACGCGGTTTCTCAGGTGTGCCGGCGGTGGTACGAGCTTGACTCGTTGACCAGGAAGCACGTGACTATTGCTCTTTGCTACACCACCACGCCGGCACGCCTTCGCCGGCGGTTCCCTCACTTGGAGTCTCTGAAGTTGAAGGGGAAGCCAAGGGCTGCTATGTTCAACTTGATACCTGAGGATTGGGGAGGTCACGTGACACCTTGGGTTAGAGAGATTTCACAGTATTTTGATTGCCTTAAGAGTCTTCATTTTCGCCGTATGATTGTTAGAGATTGCGATCTTCAGCTTCTTGCACGGTCACGTGGTCACGTGCTTCAAGCTCTTAAGCTTGATAAGTGTTCTGGGTTTTCGACTGATGGACTTTACTATATTGGTCGTTTTTGCAGGAATTTAAGAGTCTTGCTTTTGGAGGAAAGCATAATTGTTGAAAAAGATGGCAAATGGCTACATGAGCTTGCTTTGAATAATACAGTTCTTGAGACTTTGAATTTTTACTTGACAGATATAGCTGATGTCAAAATTCAGGACCTTGAACTTTTAGCCAAAAATTGCCCCAACTTAGTGTCTGTGAAAATTACTGATTGTGAAATCTCGGATCTTGTGAACTTCTTCCGGTATGCAACTGTTCTGGAAGAATTTTGTGGAGGCACCTACAATGAGGAGCCAGATAAATACTCTGCTGTATCATTACCAGCAAAGTTATGCCAATTGGGGTTAACATATATTGGAAAGAACGAGTTGCCAATAGTGTTCATGTTCGCAGCTGTGCTAAAAAAATTGGATCTCCTCTATGCCATGCTGGATACAGAGGATCATTGTATGTTAATCCAAAGGTGCCCAAATTTGGAAGTCCTTGAGACAAGGAATGTAATTGGAGATAGAGGGTTAGAAGTTCTTGGTCGCTGTTGTAGGAAGCTGAAAAGACTTAGGATTGAACGAGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTACTGTCTCCCACAGAGGACTAATTGCTTTGTCACAGGGCTGTGCAGAGCTTGAATATTTGGCTGTTTACGTGTCCGATATTACTAATGCATCTTTGGAACATATCGGCACTCACTTGAAAAACCTCTGCGATTTTCGCCTTGTCTTACTTGATCATGAAGAGAAAATAACTGATTTGCCACTTGACAATGGAGTGCGTGCTTTGCTGAGGGGTTGTGACAAGCTTAGAAGATTTGCACTGTATTTGAGGCGTGGTGGCTTGACTGATGTAGGTCTTGGTTATATTGGACAATACAGCCAAAATGTGAGATGGATGTTGTTGGGGTATGTGGGAGAGACTGATGCAGGGCTTTTGGAGTTCTCCAAGGGGTGTCCCAGTCTTCAGAAACTTGAAATGAGAGGGTGTTCCTTTTTTAGTGAGCATGCACTTGCTATTGCTGCTACACAGTTGACTTCTCTTAGGTACTTGTGGGTGCAAGGGTATGGTGCATCTCCATCTGGACGTGATCTCTTGGCAATGGCTCGCCCCTTTTGGAATATTGAGTTAATTCCTTCTAGAAGGGTTGCCATGCATGATGAGACTGTGGTTGTTGAACATCAAGCTCATATTCTTGCATATTACTCTCTTGCTGGCCAAAGATCAGATTTTCCAGATTATGTTGTGCCTTTGGACCCTGCAACATATGTTGACGCCTAG 1767 0.4375 MMEDNRNMKRNRVVDVVIDCVIPYIHDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVREISQYFDCLKSLHFRRMIVRDCDLQLLARSRGHVLQALKLDKCSGFSTDGLYYIGRFCRNLRVLLLEESIIVEKDGKWLHELALNNTVLETLNFYLTDIADVKIQDLELLAKNCPNLVSVKITDCEISDLVNFFRYATVLEEFCGGTYNEEPDKYSAVSLPAKLCQLGLTYIGKNELPIVFMFAAVLKKLDLLYAMLDTEDHCMLIQRCPNLEVLETRNVIGDRGLEVLGRCCRKLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCAELEYLAVYVSDITNASLEHIGTHLKNLCDFRLVLLDHEEKITDLPLDNGVRALLRGCDKLRRFALYLRRGGLTDVGLGYIGQYSQNVRWMLLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEHALAIAATQLTSLRYLWVQGYGASPSGRDLLAMARPFWNIELIPSRRVAMHDETVVVEHQAHILAYYSLAGQRSDFPDYVVPLDPATYVDA* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03993 588 CDD F-box_AtTIR1-like 24 49 - -
Rops11g03993 588 Gene3D - 2 49 - -
Rops11g03993 588 FunFam Coronatine-insensitive protein 1 50 583 - -
Rops11g03993 588 SMART LRR_CC_2 429 455 IPR006553 -
Rops11g03993 588 SMART LRR_CC_2 216 238 IPR006553 -
Rops11g03993 588 SMART LRR_CC_2 371 395 IPR006553 -
Rops11g03993 588 SMART LRR_CC_2 134 159 IPR006553 -
Rops11g03993 588 SMART LRR_CC_2 481 506 IPR006553 -
Rops11g03993 588 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 29 247 - -
Rops11g03993 588 Pfam Transport inhibitor response 1 protein domain 70 116 IPR041101 -
Rops11g03993 588 Pfam F-box 12 51 IPR041567 -
Rops11g03993 588 Gene3D Ribonuclease Inhibitor 50 584 IPR032675 -
Rops11g03993 588 SUPERFAMILY RNI-like 101 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03993 Rops-Chr11 74427568 74431382 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03993 K13463 - gmx:732662 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03993 11 74427568 74431382 Rops11g03993 11 74427568 74431382 ECH
Rops11g03993 11 74427568 74431382 Rops9g00871 9 14208965 14213139 PCT