Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00835 ATGGGAAATAACATGGTAACCTACAACAAGTACAAAAGTTTCTTGTTCTTCATCAGAAAGTACAAGGTTACTGAGCTGGTTCCACCTCAGGACCTGAGAGAAGCGTTTTCAAAGTTCACCGATGGAGGGTCCCACATGTCCACCGTGAAGTTCCACCAGTTCCTGGTGGAGCACCAGGGTGAAGAAGATTGCACCTTATCGGATTCAGAGAAGATTTTTGATAAGGTTTTGCAAATGAGAAGGCCAAGTCAGGAAACTGTTAATGATCAAAATAGAGAAAATGAAATCACCCTTGATGACATCTTCCATTTTTTGCTTCACCATGATTTCAATTGTCCCTTGAAAACTGAGGTACATCATGATATGAGTGCTCCATTGTCACATTATTTCATATATACAGGGCATAACTCCTATATAACTGGGAACCAATTGAGTAGTGATTGCAGTGAAGAGCCAATCATAAAGGCTTTGCAACGAGGCGTGCGTGTTATTGAACTAGATTTATGGCCAACTTCCAATAAAGATGATATTAAAGTAGATCATGGATGGACTCTTACCAATCCTGTCTCACCTATCAAATGTCTTGAGTCCATAAAGAAATATGGTTTTGTTGCATCTCAGTACCCAGTGATCATAACTATAGAAGACCATCTTACAGCAGATCTTAGAGCTAAATTTGCAGAAATGGCAACTGAAATATTTGGAGAGATGCTTTATTATCCTCAAACAGATTGTATAACAGAATTCCCATCACCAGAATCATTGAAAAGTAGAGTTATTATATCAACCAAGTCTCCAAAAGAATCTTTTGAGTCCAACCGTATCAAGGACATTGGCAACAACACTATGCTGAATGAAAGTGAATCATCTGAAGAAGAAGAATCATCAGGAAAGGAATCACCAGACTCTAGGACTGAAATGGAGACTGAGGGCACGCAGAATGGAAGTGATCGTGACGAGGGAGACACAAGTGTATGTGAATGTGATCAAAGATCATATCAGAAGAGTTCACCTGATTACACACGTATAATTACAATCCATAATAGGAAATTCAAGGGTAGCCTGAAGGATAAATTGAAAACTGAAGGTGAACTTAGACGCCTAAGTTGGAGTGAAACAACCCTTGAAAAGGCTTCAGAATCACATGGAACAGACATTGTAAGGTTCTCACAGAAAAATATCCTCAGGGTATACCCAAGGGCATTGCGTGTGAAATCCACAAATTTCAAGCCACATATTGGGTGGATGTATGGGGCTCAGATGGTTGCATTCAACATGCAGGGGCATGGCAAATCACTCTGGTTGATGCAGGGGATGTTCAGGGCAAATGGAGGATGTGGTTATGTAAAAAAGCCTCAAATTCTAATGCAGAAACATCATTGTGACAATGAGTTTGATCCTACAAGGGTATTGCCAGTGAAGAAGACCTTAAAGGTAAAAGTATACATGGGACAAGGGTGGAGCTTAGATTTCAGTCCTACACACTTCGATAAGTGCTCTCCACCAGACTTTTACACAAAGGTCCGTGTTGCTGGAGTGCCTGCTGATATTGCAAAGAAGAAAACAAAGGTAATCATGGACAATTGGTATCCTGTTTGGGATGAAGAGTTTGAATTCCCTTTGACTGTTCCAGAGCTTGCTTTGCTTCAGATACAAGTAAGGGACAAAGATCAGGGAAAGGCTGACTTTGCCGGGCAAACATGTTTGCCAGTGTCAGAGCTAAAACATGGATTTCGTTCAGTCCCTTTATATAACAAAAAAGGAGAGAAATTTGAATCTGTAAAGCTGTTAATGAGGTTTCAGTTCACATGA 1812 0.4029 MGNNMVTYNKYKSFLFFIRKYKVTELVPPQDLREAFSKFTDGGSHMSTVKFHQFLVEHQGEEDCTLSDSEKIFDKVLQMRRPSQETVNDQNRENEITLDDIFHFLLHHDFNCPLKTEVHHDMSAPLSHYFIYTGHNSYITGNQLSSDCSEEPIIKALQRGVRVIELDLWPTSNKDDIKVDHGWTLTNPVSPIKCLESIKKYGFVASQYPVIITIEDHLTADLRAKFAEMATEIFGEMLYYPQTDCITEFPSPESLKSRVIISTKSPKESFESNRIKDIGNNTMLNESESSEEEESSGKESPDSRTEMETEGTQNGSDRDEGDTSVCECDQRSYQKSSPDYTRIITIHNRKFKGSLKDKLKTEGELRRLSWSETTLEKASESHGTDIVRFSQKNILRVYPRALRVKSTNFKPHIGWMYGAQMVAFNMQGHGKSLWLMQGMFRANGGCGYVKKPQILMQKHHCDNEFDPTRVLPVKKTLKVKVYMGQGWSLDFSPTHFDKCSPPDFYTKVRVAGVPADIAKKKTKVIMDNWYPVWDEEFEFPLTVPELALLQIQVRDKDQGKADFAGQTCLPVSELKHGFRSVPLYNKKGEKFESVKLLMRFQFT* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00835 603 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 347 453 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops9g00835 603 PRINTS Phospholipase C signature 151 171 IPR001192 GO:0035556
Rops9g00835 603 PRINTS Phospholipase C signature 248 265 IPR001192 GO:0035556
Rops9g00835 603 PRINTS Phospholipase C signature 415 433 IPR001192 GO:0035556
Rops9g00835 603 PRINTS Phospholipase C signature 569 579 IPR001192 GO:0035556
Rops9g00835 603 PRINTS Phospholipase C signature 394 415 IPR001192 GO:0035556
Rops9g00835 603 PRINTS Phospholipase C signature 125 143 IPR001192 GO:0035556
Rops9g00835 603 MobiDBLite consensus disorder prediction 294 326 - -
Rops9g00835 603 Gene3D - 24 113 - -
Rops9g00835 603 SUPERFAMILY PLC-like phosphodiesterases 120 457 IPR017946 GO:0006629|GO:0008081
Rops9g00835 603 MobiDBLite consensus disorder prediction 271 331 - -
Rops9g00835 603 SMART plcy_3 340 456 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops9g00835 603 SMART C2_3c 476 583 IPR000008 -
Rops9g00835 603 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 120 264 - -
Rops9g00835 603 Pfam C2 domain 476 577 IPR000008 -
Rops9g00835 603 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 476 602 IPR035892 -
Rops9g00835 603 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 13 602 IPR001192 GO:0035556
Rops9g00835 603 Gene3D Phosphatidylinositol (PI) phosphodiesterase 117 468 IPR017946 GO:0006629|GO:0008081
Rops9g00835 603 Gene3D C2 domain 471 603 IPR035892 -
Rops9g00835 603 SUPERFAMILY EF-hand 5 122 IPR011992 -
Rops9g00835 603 ProSiteProfiles C2 domain profile. 457 585 IPR000008 -
Rops9g00835 603 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 369 455 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops9g00835 603 Pfam Phosphatidylinositol-specific phospholipase C, X domain 122 264 IPR000909 -
Rops9g00835 603 SMART plcx_3 120 264 IPR000909 -
Rops9g00835 603 CDD C2_PLC_like 474 603 - -
Rops9g00835 603 FunFam Phosphoinositide phospholipase C 471 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00835 Rops-Chr9 12911856 12915716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00835 3 602 Acyl Lipid Metabolism Gene Families AT2G40116 55.484 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00835 K05857 - gmx:100820253 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03959 11 73758962 73762830 Rops9g00835 9 12911856 12915716 PCT