Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03959 ATGAAGATGAAGATCTACAAGTTATTAAATTTCTTGACCAAAAAAGGTGAAAACAACAAGCCAGAACCTCCTTTGGATCTTATGGAAGCATTTTCCAAGTTTGCCAATGGTGGGAACCACATGTCAAAGGATCAGCTCCTTCGGTTCATGGTGGATTACCAGGGAGAAAGGAACATCACGTTAGCGGATTTGGAGCCACTTGTTGAGAAGGTTTTGCAAGTTAAAACCAGCAATGTTGCAAATGAGTATAGGGGACAAGGAGGACTCAGTCTCCATGACTTGATCAATTTTCTGCTTCTTGATGATTTCAATGGTCCCTTGAAAGACGAGGTACATCATGATATGAGTGCTCCCTTGTCACACTATTTCATGTATACAGGACACAATTCTTACCTAACCGGTAATCAACTTACTAGTGAGAGCAGTGATGAGCCAATTAAAGAGGCATTGCAACAAGGTGTACGAGTGATTGAACTTGATTTATGGCCATCTTCAACTAAAGATGGTATAAAAGTAGTTCATGGAAGGACTCTTACCACTCCAGTGTCACCAACCAGATGTCTGGAATCCATCAAGAAATATGCTTTTGTTAAATCAGATTTTCCAGTGATTCTAACTTTGGAAGACCACCTAACATCCAAACTTCAAGCTAAATTTGCAGAAATGGCAACCCAAATATTTGGAGAAATGCTTTATTGTCCTGAGGCAGATTGTTTGACAGAATTCCCCTCACCTGAATCGTTGAAAAATCGGGTAATTATATCAACCAAACCACCAAAGGAATATCCACAATCTGATAGTATCAGCAATCCTTTGTCAAATGGAAGTGAATCATCTGAAGAAGAATCATGGGGAGAGGAATTGCCAGATTCTATAGATATACTGAAAACTGAGGATAAGAATGTAAGTGATGAAGACGAGGAGGACATAAACACATGTGATAACAAACCAAATCAGCAAGGTGCACGTCAATATAAACACTTGATTACAATCCATGGTGGGAAATCAAAAGGTTCCTTGAAGAATGTACTGAAAGTTGATGGCAAAATCAGGCGGCTAAGTCTGAGTGAGAAGAAACTCAAAAGTGCTTCTGAATCTCATGGAGCCGACCTTATTAGGTTCACACAGAAAAATATCCTCAGAGTTTATCCTAAAGGAGAACGTATCCAATCCTCAAATTTTAGACCACATTTAGGGTGGATGTATGGAGCTCAAATGGTGGCATTCAATATGCAGGGGCATGGCAAATCGCTTCGATTAATGCAGGGGATGTTCAGAGCAAATGGAGGGTGTGGTTATGTGAAAAAGCCTGAATTTTTAACGAGAAATCTTCCACATGAAGAGGAGTTTGATCCAAAAAGAAAATTGGCAGTGAAGCAGATATTAATGGTAAAAGTATACAAAGGAGACGGGTGGAGGTCAGATTTCAGTGAAACACACTTTGATCGATTCTCCCCTCCAGACTTTTACACAAAGGTGTGTATTGTTGGAGTGCCAGCTGATTGTAAGAAGAAGAAAACAAGTGTAAAGATGGACAATTGGTATCCTGTTTGGGATGAAGAGTTTGAATTCCAATTGACTGTTCCTGAGCTTGCTTTGCTGCGGATAGAAGTAAAGGATAAAGATAAAGGGAAAGATGACTTTGCAGGGCAGACTTGTTTGCCAGTATCAGAGCTGAGACATGGATTTCGACCAGTCCCTCTGTATGACAGAAAGGGAAAGAAATTTCAATCTGTGAAGCTTTTAGTGCGGTTTCAGCTCAAGACTCTTCTTCTTTAA 1779 0.3997 MKMKIYKLLNFLTKKGENNKPEPPLDLMEAFSKFANGGNHMSKDQLLRFMVDYQGERNITLADLEPLVEKVLQVKTSNVANEYRGQGGLSLHDLINFLLLDDFNGPLKDEVHHDMSAPLSHYFMYTGHNSYLTGNQLTSESSDEPIKEALQQGVRVIELDLWPSSTKDGIKVVHGRTLTTPVSPTRCLESIKKYAFVKSDFPVILTLEDHLTSKLQAKFAEMATQIFGEMLYCPEADCLTEFPSPESLKNRVIISTKPPKEYPQSDSISNPLSNGSESSEEESWGEELPDSIDILKTEDKNVSDEDEEDINTCDNKPNQQGARQYKHLITIHGGKSKGSLKNVLKVDGKIRRLSLSEKKLKSASESHGADLIRFTQKNILRVYPKGERIQSSNFRPHLGWMYGAQMVAFNMQGHGKSLRLMQGMFRANGGCGYVKKPEFLTRNLPHEEEFDPKRKLAVKQILMVKVYKGDGWRSDFSETHFDRFSPPDFYTKVCIVGVPADCKKKKTSVKMDNWYPVWDEEFEFQLTVPELALLRIEVKDKDKGKDDFAGQTCLPVSELRHGFRPVPLYDRKGKKFQSVKLLVRFQLKTLLL* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03959 592 FunFam Phosphoinositide phospholipase C 456 588 - -
Rops11g03959 592 Pfam C2 domain 461 561 IPR000008 -
Rops11g03959 592 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 461 586 IPR035892 -
Rops11g03959 592 SMART plcx_3 113 257 IPR000909 -
Rops11g03959 592 MobiDBLite consensus disorder prediction 256 321 - -
Rops11g03959 592 Gene3D - 23 105 - -
Rops11g03959 592 Pfam Phosphatidylinositol-specific phospholipase C, X domain 115 257 IPR000909 -
Rops11g03959 592 Gene3D C2 domain 455 591 IPR035892 -
Rops11g03959 592 CDD C2_PLC_like 459 588 - -
Rops11g03959 592 ProSiteProfiles C2 domain profile. 441 570 IPR000008 -
Rops11g03959 592 PRINTS Phospholipase C signature 241 258 IPR001192 GO:0035556
Rops11g03959 592 PRINTS Phospholipase C signature 554 564 IPR001192 GO:0035556
Rops11g03959 592 PRINTS Phospholipase C signature 379 400 IPR001192 GO:0035556
Rops11g03959 592 PRINTS Phospholipase C signature 144 164 IPR001192 GO:0035556
Rops11g03959 592 PRINTS Phospholipase C signature 118 136 IPR001192 GO:0035556
Rops11g03959 592 PRINTS Phospholipase C signature 400 418 IPR001192 GO:0035556
Rops11g03959 592 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops11g03959 592 SMART C2_3c 461 568 IPR000008 -
Rops11g03959 592 SMART plcy_3 325 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops11g03959 592 Gene3D Phosphatidylinositol (PI) phosphodiesterase 109 454 IPR017946 GO:0006629|GO:0008081
Rops11g03959 592 SUPERFAMILY PLC-like phosphodiesterases 113 442 IPR017946 GO:0006629|GO:0008081
Rops11g03959 592 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 353 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops11g03959 592 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 22 587 IPR001192 GO:0035556
Rops11g03959 592 MobiDBLite consensus disorder prediction 260 279 - -
Rops11g03959 592 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 113 257 - -
Rops11g03959 592 SUPERFAMILY EF-hand 10 115 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03959 Rops-Chr11 73758962 73762830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03959 6 585 Acyl Lipid Metabolism Gene Families AT2G40116 56.601 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03959 K05857 - gmx:100803435 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03959 11 73758962 73762830 Rops11g03959 11 73758962 73762830 ECH
Rops11g03959 11 73758962 73762830 Rops9g00835 9 12911856 12915716 PCT