Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00787 ATGGAAGCTCTCAAGACCATTTCCACCATGGGAAAACACATCATCTTCTTAGCTATTTTTGTTCTCTTAGCTTCAGCATTGTCTTTAGCACAAGCCAAAATTCATGAGCACGAGTTTGTTGTTCAAGCAACTCCAGTGAAGAGGCTGTGCAACACTCATAGCTCCATCACAGTAAATGGACAATTCCCTGGCCCAACATTGGAAGTCAACAATGGTGACACTTTGGTCGTTAAAGTCACTAACAAAGCTCGTTACAATGTCACCATTCATTGGCATGGTATTAGGCAGATGAGAACAGGATGGGCTGATGGACCAGAATTTGTGACTCAGTGTCCTATTCGTCCTGGAGAAAGTTACACTTACCGATTTACCATTCAAGGACAAGAAGGCACACTTTGGTGGCATGCTCATAGCTCATGGCTAAGAGCCACAGTTTATGGTGCTTTAATCATACATCCAAGGGAAGGAGAGGGTTATCCTTTCCTTAAGCCAAAGCGTGAGACACCCATTCTTTTAGGGGAATGGTGGGACGCAAATCCTATGGATGTTGTGAGACAGGCTACACAAACAGGTGCAGCTCCGAATGTGTCTGATGCATACACTATCAATGGTCAACCTGGTGATCTTTACAAGTGCTCTAGCCAAGGCACTACCATTATTCCAATAGATTCTGGAGAGACCAATCTCCTCAGGGTCATCAATGCTGGACTCAATCAACCCCTCTTCTTCACTGTCGCCAACCATAAACTCATAGTGGTTGGTGCTGATGCCTCATACATAAAACCTTTCACCACCACTGTCCTCATGCTAGGACCTGGCCAAACCACTGATGTTCTCATAAAGGGTGACCAGCCACCATCTAGGTACTACATGGCAGCACGTGCCTACCAATCAGCACAAAACGCTCCATTTGACAACACCACCACCACTGCCATTCTTGAATACAAATCAGCACCATGTCCTGCTAAGGGTGTAACAATTAAACCAGTTATGCCTCGTCTCCCTGCCTATAATGACACAAACACTGTCACTGCCTTCAGCAAAAGTTTCAGAAGTTTGAGGCAAGCTGAGGTACCCACAGAAATAGATGAAGACCTCTTCTTCACCATTGGCTTAGGACTCAACAATTGCCCACCAAATTTTAGCCCAAACCAATGCCAGGGACCTAATGGAACAAGGTTCACTTCTAGCATGAACAATGTTTCCTTTGTTCTACCAAGCAACTTTTCAATCCTTCAGGCTCATCATCTTGGAGTTCAAGGAGTTTTCACCACTGATTTTCCAACAAAACCTCCTGTGCAATTTGACTACACTGGTAATGTGAGCCGTTCACTATGGCAACCTGTGCCAGGGACTAAAGTAACCAAGTTGAAGTTTGGATCAAGGGTACAGATTGTGTTGCAGGACACAAGCATTGTCACTCCTGAGAACCACCCAGTTCATCTTCATGGATATGATTTCTATATTGTAGCGGAGGGATTTGGAAATTTTGACCCCAAAAAAGATACTTCAAAATTCAACCTTGTTGATCCACCTATGAGGAACACAGTGGCAGTACCTGTGAATGGATGGGCAGTTATTAGATTTGTTGCTGACAACCCAGGTGCTTGGATTATGCATTGTCACTTGGATGTTCACATTGGATGGGGTTTGGCTACTGTGTTCTTGGTAGATAATGGAGTAGGACTATTGCAATCCATAGAAGCTCCTCCAGAGGACCTGCCTCTCTGTTAG 1734 0.4458 MEALKTISTMGKHIIFLAIFVLLASALSLAQAKIHEHEFVVQATPVKRLCNTHSSITVNGQFPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPGESYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPREGEGYPFLKPKRETPILLGEWWDANPMDVVRQATQTGAAPNVSDAYTINGQPGDLYKCSSQGTTIIPIDSGETNLLRVINAGLNQPLFFTVANHKLIVVGADASYIKPFTTTVLMLGPGQTTDVLIKGDQPPSRYYMAARAYQSAQNAPFDNTTTTAILEYKSAPCPAKGVTIKPVMPRLPAYNDTNTVTAFSKSFRSLRQAEVPTEIDEDLFFTIGLGLNNCPPNFSPNQCQGPNGTRFTSSMNNVSFVLPSNFSILQAHHLGVQGVFTTDFPTKPPVQFDYTGNVSRSLWQPVPGTKVTKLKFGSRVQIVLQDTSIVTPENHPVHLHGYDFYIVAEGFGNFDPKKDTSKFNLVDPPMRNTVAVPVNGWAVIRFVADNPGAWIMHCHLDVHIGWGLATVFLVDNGVGLLQSIEAPPEDLPLC* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00787 577 ProSitePatterns Multicopper oxidases signature 2. 540 551 IPR002355 GO:0005507
Rops9g00787 577 Gene3D - 165 356 IPR008972 -
Rops9g00787 577 Gene3D - 381 577 IPR008972 -
Rops9g00787 577 CDD CuRO_2_LCC_plant 169 315 IPR034285 -
Rops9g00787 577 CDD CuRO_3_LCC_plant 422 560 IPR034289 GO:0005507
Rops9g00787 577 SUPERFAMILY Cupredoxins 357 577 IPR008972 -
Rops9g00787 577 PANTHER MULTI-COPPER OXIDASE 33 562 IPR045087 -
Rops9g00787 577 SUPERFAMILY Cupredoxins 30 181 IPR008972 -
Rops9g00787 577 Gene3D - 23 153 IPR008972 -
Rops9g00787 577 FunFam Laccase 23 153 - -
Rops9g00787 577 ProSitePatterns Multicopper oxidases signature 1. 535 555 IPR033138 -
Rops9g00787 577 NCBIfam laccase 32 577 IPR017761 GO:0046274|GO:0048046|GO:0052716
Rops9g00787 577 Pfam Multicopper oxidase 41 155 IPR011707 GO:0005507
Rops9g00787 577 Pfam Multicopper oxidase 427 559 IPR011706 GO:0005507|GO:0016491
Rops9g00787 577 SUPERFAMILY Cupredoxins 161 352 IPR008972 -
Rops9g00787 577 FunFam Laccase 165 356 - -
Rops9g00787 577 CDD CuRO_1_LCC_plant 37 153 IPR034288 GO:0005507
Rops9g00787 577 Pfam Multicopper oxidase 167 317 IPR001117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00787 Rops-Chr9 12292621 12295832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00787 K05909 - gmx:100797749 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03911 11 73147277 73150917 Rops9g00787 9 12292621 12295832 PCT