Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00634 ATGGAGATTCATCGCCGGCCGCCGGTTACCGGTGACGACGGCGCCTCCGTGAGAGACAACCACCACCATCCTCACCTGCAGAAAAAGCCTTCCTCCGCCTCATCTTCCCCTACTCCGAAAGCCTCCGACGCTCTCCCTCTCCCTCTGTATCTCACCAACGCAATTTTCTTCACGCTATTCTTCTCCGTCGCTTACTACCTCCTCCACCGGTGGCGCGATAAGATCCGAAGCTCCACGCCTCTCCATGTTGTAACACTCTCCGAGATCACTGCCATTGTTTCACTCATCGCTTCATTCATCTACCTCCTTGGCTTCTTCGGAATCGATTTTGTTCAATCCTTCATCTCACGCGCTTCTCATGATGTTTGGGACCTTGACGACACCGTTTCCGATCAGTCAATTCCGAAATTGTCCCCGCCGGAGCCGTTAATTTCCTCGGAGGAAGATGAGGAGATCGTGAAATCGGTGGTTGACGGTGTCACGCCGTCGTACGCGCTTGAATCAAGGCTCAGTGATTGCCGGCGCGCCGCCGCGATCCGCCGTGTGGCGCTGCAGAGGTCGATAGGGAGGTCTTTGGAGGGTTTGCCGTTGGAAGGGTTCGATTATGAATCGATTTTGGGGCAGTGTTGTGAAATGCCGGTTGGTTATGTTCAGATTCCGGTGGGTGTGGCGGGGCCGTTGTTGTTGGATGGATTTGAATACACGGTGCCGATGGCGACCACGGAAGGGTGCTTGGTGGCGAGTACTAATAGAGGGTGCAAGGCTATTTATATGTCTGGTGGGGCTAATAGTGTTGTTTTGAAGGATGGAATGTCAAGGGCACCTGTTGTTAGGTTTAACACTGCTAAAAGGGCTGCTCAGTTGAAATTCTATTTGGAGGATCCTCTCAATTTTGATACCTTGGCTGTTATTTTCAACAGGTCAAGTAGATTTGCCAGGCTTCAAGGTATTCATTGTGCTATGGCTGGGAAGAACGTTTATATGAGATTTACTTGTAGCACTGGTGATGCCATGGGGATGAACATGGTCTCCAAAGGGGTGCAGAATGTTCTTGATTTCCTTCAAAATGATTTCCCTGACATGGATGTTATTGGCATTTCTGGAAATTATTGTTCGGACAAGAAACCTGCTGCAGTAAATTGGATAGAGGGACGTGGGAAATCAGTTGTTTGTGAAGCAATTATCAAAGAAGAAGTGGTGAAGAATGTATTGAAGACCAATGTTGCTTCCCTGGTGGAGCTTAACATGCTCAAAAACCTTGCTGGTTCTGCTGTTGCTGGTGCTCTTGGTGGATATAATGCGCATGCTAGTAACATTGTCTCTGCAATTTTTATAGCAACTGGTCAAGATCCAGCTCAAAATGTTGAGAGTTCCCATTGCATAACAATGATGGAAGCCGTCAATGATGGGAGAGACCTTCATATCTCAGTGACTATGCCTTCCATTGAGGTGGGTACAGTTGGGGGTGGGACTCAACTTGCATCTCAATCTGCTTGCTTGAATTTGCTTGGTGTAAAGGGTGCAAGCAAGGAGTCACCAGGATCAAACTCAAGACTGTTGGCCACCATTGTTGCTGGATCTGTTTTAGCAGGAGAGCTGTCTCTCATGTCTGCCATTGCAGCTGGGCAGCTAGTCAACAGCCACATGAAATACAACAGATCAAGCAAAGATGTATCTAAAGTATCATCTTGA 1692 0.4835 MEIHRRPPVTGDDGASVRDNHHHPHLQKKPSSASSSPTPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWRDKIRSSTPLHVVTLSEITAIVSLIASFIYLLGFFGIDFVQSFISRASHDVWDLDDTVSDQSIPKLSPPEPLISSEEDEEIVKSVVDGVTPSYALESRLSDCRRAAAIRRVALQRSIGRSLEGLPLEGFDYESILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYMSGGANSVVLKDGMSRAPVVRFNTAKRAAQLKFYLEDPLNFDTLAVIFNRSSRFARLQGIHCAMAGKNVYMRFTCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKNVLKTNVASLVELNMLKNLAGSAVAGALGGYNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSHMKYNRSSKDVSKVSS* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00634 563 Gene3D - 270 386 IPR009023 -
Rops9g00634 563 Pfam Hydroxymethylglutaryl-coenzyme A reductase 177 553 IPR002202 GO:0004420|GO:0015936
Rops9g00634 563 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 149 553 IPR004554 GO:0004420|GO:0005515|GO:0008299
Rops9g00634 563 Gene3D - 220 540 IPR023074 GO:0004420
Rops9g00634 563 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 538 551 IPR023076 GO:0004420
Rops9g00634 563 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 329 343 IPR023076 GO:0004420
Rops9g00634 563 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 31 557 IPR002202 GO:0004420|GO:0015936
Rops9g00634 563 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 145 219 - -
Rops9g00634 563 Gene3D - 138 219 IPR023282 GO:0004420
Rops9g00634 563 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 149 553 IPR002202 GO:0004420|GO:0015936
Rops9g00634 563 MobiDBLite consensus disorder prediction 1 39 - -
Rops9g00634 563 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 143 542 IPR009029 GO:0015936|GO:0016616
Rops9g00634 563 CDD HMG-CoA_reductase_classI 150 553 IPR004554 GO:0004420|GO:0005515|GO:0008299
Rops9g00634 563 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 270 386 - -
Rops9g00634 563 MobiDBLite consensus disorder prediction 1 21 - -
Rops9g00634 563 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 484 491 IPR023076 GO:0004420
Rops9g00634 563 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 270 386 IPR009023 -
Rops9g00634 563 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 375 548 - -
Rops9g00634 563 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 367 392 IPR002202 GO:0004420|GO:0015936
Rops9g00634 563 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 327 345 IPR002202 GO:0004420|GO:0015936
Rops9g00634 563 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 418 444 IPR002202 GO:0004420|GO:0015936
Rops9g00634 563 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 472 493 IPR002202 GO:0004420|GO:0015936
Rops9g00634 563 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 209 230 IPR002202 GO:0004420|GO:0015936
Rops9g00634 563 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 236 256 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00634 Rops-Chr9 8961845 8965110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00634 1 559 Lipid Metabolism Gene Families AT1G76490 75.773 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00634 K00021 - gmx:100784330 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00634 9 8961845 8965110 Rops1g01427 1 31565558 31570281 ECH
Rops9g00634 9 8961845 8965110 Rops9g00634 9 8961845 8965110 ECH