Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01427 ATGCTAAAACTGGCACAGGGAGAAATGAACGTTCCCCGGCGAGTTTTCAAAGCTGCCGGCGGCGAACCGATGAAAATGAAAAACCAAAAGCCGGATTCACATTCAGTGCTGTACTTAACCAACGCTGTCTTCTTCGGCCTTTTCTTCTCTGTAGCGTACTTCCTTCTCCTCCGATGGCGTGAGAAGATTCGAACCTCAACCCCTCTCCACGTTGTCACAATCTCTGAAATTTCTGCCATCGTTTCCCTCATCGCTTCCGTCATCTACCTCATGTCCTTCTTCGGCATTAGCTTCATTCTTCATCCATTCGCCGCTTCACGCGTTGTCCCTGAAGATGAAGAATACGAAGCCGTCATTGCCAAAGACGACGCCCACACTTGCCTCCTCGACCGCTCCACCGTCGGGCAGAACCTCCCTCCGCAGCCGAAAATCGCCGACGAAAAACCCCCGCCGTTAACGACGATGTCCGTGGACGACGAGGAAATTGTCAAGGCGGTGGTTTCGGGGTCGATTCCGTCGTATTCTCTGGAGTCCAAGCTCGGGGATTGCCGGCGTGCGGCTGTGATACGGCGGAATGCGGTGGAGATTGTAACCGGAAGGTCGCTGGAGGGTTTACCGGTGGAAGGGTTTGATTATGATTCGATATTGGGGCAGTGTTGTGAGATGCCAGTTGGGTTTGTTCAGATTCCGGTTGGGGTGGCGGGTCCTCTGTTACTTGACGGGAATGAATACATGGTGCCAATGGCCACCACGGAGGGTTGTTTGGTGGCTAGTACCAACAGAGGTTGCAAGGCTATTCATATTTCCGGTGGAGCTTCCTCCATGCTCCTCAGTGATGGCATGACCAGAGCCCCTGTTGTGAGGTTCAACTCTGCCAAAAGAGCTTCTCAGTTAAAGCTGTTCTTAGAAGATCCCCTCAACTTTGATTCCCTGGCTCTCGCTTTCAACAAATCAAGTAGGTTTGCGAAGTTACAGAGTATTAAGCCTAACATGGCAGGGAAGAATTTGTATATTAGATTCAGTTCCACCACCGGGGATGCCATGGGGATGAACATGGTATCCAAAGGTGTCCAAAATGTGCTTGCTTTCCTTCAAGAAGATTTTCCTGACATGGATGTTATTGGAATATCGGGAAATTTCTGTTCAGATAAAAAAGCAGCAGCTGTGAACTGGATTGATGGGCGTGGCAAATCTGTGGTGTGTGAGGCTATAATTAAGGAAGAGGTGGTGAAGAAAGTGTTGAAGACCAGTGTTGAGGCCTTGGTTGAACTCAACATGCTCAAGAACCTTACTGGCTCAGCTGTGGCTGGTGCTCTTGGTGGCTTCAATGCACATGCTAGCAATATCGTTTCTGCTATCTACTTAGCCACTGGTCAGGATCCTGCTCAGAATGTGGAAAGTTCTCACTGTATCACTATGATGGAAGCTGTGAACGATGGCAAGGACCTTCACATCTCCGTCACCATGCCTTCCGTTGAGGTGGGTACAGTTGGAGGGGGCACACAGCTCGCATCTCAGTCAGCTTGTCTTAATTTACTTGGTGTGAAGGGTGCCAGCAAAGAGTCTCCAGGTGCAAATTCAAGGCAACTGGCAACCATAGTAGCTGGTTCAGTCCTCTCCGGGGAGCTCTCACTCATGTCTGCAATTGCAGCTGGTCAGCTTGTTAATAGCCACATGAAATACAACAGATCAAGCAAGGATATCTCCAAAATGGCCTCATGA 1722 0.4977 MLKLAQGEMNVPRRVFKAAGGEPMKMKNQKPDSHSVLYLTNAVFFGLFFSVAYFLLLRWREKIRTSTPLHVVTISEISAIVSLIASVIYLMSFFGISFILHPFAASRVVPEDEEYEAVIAKDDAHTCLLDRSTVGQNLPPQPKIADEKPPPLTTMSVDDEEIVKAVVSGSIPSYSLESKLGDCRRAAVIRRNAVEIVTGRSLEGLPVEGFDYDSILGQCCEMPVGFVQIPVGVAGPLLLDGNEYMVPMATTEGCLVASTNRGCKAIHISGGASSMLLSDGMTRAPVVRFNSAKRASQLKLFLEDPLNFDSLALAFNKSSRFAKLQSIKPNMAGKNLYIRFSSTTGDAMGMNMVSKGVQNVLAFLQEDFPDMDVIGISGNFCSDKKAAAVNWIDGRGKSVVCEAIIKEEVVKKVLKTSVEALVELNMLKNLTGSAVAGALGGFNAHASNIVSAIYLATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSVEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRQLATIVAGSVLSGELSLMSAIAAGQLVNSHMKYNRSSKDISKMAS* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01427 573 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 159 563 IPR002202 GO:0004420|GO:0015936
Rops1g01427 573 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 159 563 IPR004554 GO:0004420|GO:0005515|GO:0008299
Rops1g01427 573 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 280 396 IPR009023 -
Rops1g01427 573 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 339 353 IPR023076 GO:0004420
Rops1g01427 573 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 280 396 - -
Rops1g01427 573 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 152 552 IPR009029 GO:0015936|GO:0016616
Rops1g01427 573 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 383 558 - -
Rops1g01427 573 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 155 229 - -
Rops1g01427 573 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 494 501 IPR023076 GO:0004420
Rops1g01427 573 Gene3D - 280 396 IPR009023 -
Rops1g01427 573 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 32 567 IPR002202 GO:0004420|GO:0015936
Rops1g01427 573 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 246 266 IPR002202 GO:0004420|GO:0015936
Rops1g01427 573 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 337 355 IPR002202 GO:0004420|GO:0015936
Rops1g01427 573 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 219 240 IPR002202 GO:0004420|GO:0015936
Rops1g01427 573 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 428 454 IPR002202 GO:0004420|GO:0015936
Rops1g01427 573 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 482 503 IPR002202 GO:0004420|GO:0015936
Rops1g01427 573 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 377 402 IPR002202 GO:0004420|GO:0015936
Rops1g01427 573 Gene3D - 154 229 IPR023282 GO:0004420
Rops1g01427 573 Pfam Hydroxymethylglutaryl-coenzyme A reductase 188 563 IPR002202 GO:0004420|GO:0015936
Rops1g01427 573 CDD HMG-CoA_reductase_classI 160 563 IPR004554 GO:0004420|GO:0005515|GO:0008299
Rops1g01427 573 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 548 561 IPR023076 GO:0004420
Rops1g01427 573 Gene3D - 230 550 IPR023074 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01427 Rops-Chr1 31565558 31570281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01427 37 569 Lipid Metabolism Gene Families AT1G76490 73.063 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01427 K00021 - gmx:100790033 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00634 9 8961845 8965110 Rops1g01427 1 31565558 31570281 ECH
Rops1g01427 1 31565558 31570281 Rops1g01427 1 31565558 31570281 ECH