Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00289 ATGGCACCCAGAATTTTTCTCCTTCTTTTATCCCTTTTGTTCATTTCAACCAGTGGTGATCTTGAGCATCATGAAGAGGGTTTCATCTCTGTGCTCATATCTGATAAGGGCCTTGATTTTGCCAAGGATTTTCTGATAGAGCAAGCTATTGCCTCTATTGTTCAGTCTCAGCTGCCAGAAATTGAGAATTCTGTACAAGTCCCTCTTATTGGAAAAGCCAAAGTGGTTCTTTCTGACATCACAATTAACGATATCCAAGTAAATTCTTCAGCTGTTAAGACAGGAGAGGAAGGCATTGTTCTGGTTGTTTCAGGTGCCACTGCCGATTTGAACTTGAAGTGGAAGTACACTTGCAGCAGTTGGTTAATCCCAATTGGAATTTCGGATAGTGGGACTGCCACTGTGAAGGTCAAAGATCTGCAAGTGGGGCTTACTGTAAATCTAAGGAACCATGAAGGAACTCTTAAGTTGATTCTCTTAGATTATGGATGTCATGTTGGAGATATATCCATAAAGTTGAACGGTGGAGCAGCTTGGCTTTACCAAGTGCTAGTAGATGCTTTTGATGGAAATATAGCATCTTCAGTTGAAGACGCCATTTCAAAGGAAATAAAAGAAGGGATAGCAACACTTGACTATTTACTGCAATCTCTTCCGAATACAATCTCATTAGATGAAACTGCTGCTCTAAATGTTTCCTTTGTGGACAATCCTGTGATAAGTGATTCTTCTATTGAATTGGAAATTAATGGTTTATTCACAGGGAGAAATGATGTTTTAGCACCTCAAAGTTACTTCAAAGGATCAGACATTTCTGTTTCCTGTGGTGGTAGACCAAAGATGATAAAGATTTCATTACATGAAAATGTTTTCCAATCGGCTTCCTTAGTGTACTTCAATGCAGATAGTTTGCAATGGATTGTTGATGAGCTACCTGATCAGGCGCTTTTGAACACTGCTGAATGGAGATTTCTTATTCCTCAATTATACAAGCAGTATCCAAATGATGACATGAATCTTAATATCTCTATAACTTCTCCACCAGTTATAGAAGTGTCGAACCAAGATGTTGGTGTTACCATTCTCATAGATATAATAATTGATGTTCTGGAAGCTGGTGAAGTCTTACCTGTTGCATGCATCTCAGTGGATGTTAGTGCTTCATTTGCTGTGGAAATTGTAGGAAACGATCTTACTGGATGGCTTAAATTGAGAAAGTTTACCACATACTTGAAATGGAGCAAAATAGGGAAACTGCACATGCATGTAATTCAGTCATTGACGTCAACTGTCCTCAAAACCGTCCTCATACCATACCTGAACTTGAAGTTAAAGAAGGGAATTCCATTGCCAATTCTTAATGGTTTTGCCATTGACAATGCACGTATCTTGTACTCTCACCCATGGATTGCAGTGTGTAGTGATGTTTCCTTCTTAGGAGACTACTATCTAAGACAGCTACCAGCTTATATATCATAA 1479 0.3881 MAPRIFLLLLSLLFISTSGDLEHHEEGFISVLISDKGLDFAKDFLIEQAIASIVQSQLPEIENSVQVPLIGKAKVVLSDITINDIQVNSSAVKTGEEGIVLVVSGATADLNLKWKYTCSSWLIPIGISDSGTATVKVKDLQVGLTVNLRNHEGTLKLILLDYGCHVGDISIKLNGGAAWLYQVLVDAFDGNIASSVEDAISKEIKEGIATLDYLLQSLPNTISLDETAALNVSFVDNPVISDSSIELEINGLFTGRNDVLAPQSYFKGSDISVSCGGRPKMIKISLHENVFQSASLVYFNADSLQWIVDELPDQALLNTAEWRFLIPQLYKQYPNDDMNLNISITSPPVIEVSNQDVGVTILIDIIIDVLEAGEVLPVACISVDVSASFAVEIVGNDLTGWLKLRKFTTYLKWSKIGKLHMHVIQSLTSTVLKTVLIPYLNLKLKKGIPLPILNGFAIDNARILYSHPWIAVCSDVSFLGDYYLRQLPAYIS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00289 492 PIRSF Lipid_binding_protein 4 482 IPR030675 GO:0005615|GO:0008289
Rops9g00289 492 Gene3D - 36 216 - -
Rops9g00289 492 Pfam LBP / BPI / CETP family, N-terminal domain 37 210 IPR017942 GO:0008289
Rops9g00289 492 Pfam LBP / BPI / CETP family, C-terminal domain 279 464 IPR001124 GO:0008289
Rops9g00289 492 Gene3D - 30 463 - -
Rops9g00289 492 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 29 241 IPR017943 GO:0008289
Rops9g00289 492 PANTHER OS06G0309200 PROTEIN 1 487 IPR045897 -
Rops9g00289 492 SMART bpi2_2 276 481 IPR001124 GO:0008289
Rops9g00289 492 SMART bpi1_3 33 258 IPR017942 GO:0008289
Rops9g00289 492 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 243 478 IPR017943 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00289 Rops-Chr9 3582002 3586642 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00289 K05399 - gmx:100804747 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00289 9 3582002 3586642 Rops9g00289 9 3582002 3586642 ECH
Rops11g02706 11 46587652 46592655 Rops9g00289 9 3582002 3586642 PCT