Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02706 ATGGCACCCTCTATTCTTTTGATTTTGTCATCCCTTTTGTTGGTTCCAACAAGTGGTTTTGTCCAACCCCATGGAGATGGTTTCATCTATGGGGTCATATCTGATAAGGGTCTTGATTATGCTAAGGATTTGCTGATAGAGAAAGGCATTGCTTCCATACTTCTGCTTCAGCTGCCTGAGATTGAGAACACTTTCCAAGTTCCATTTGTTGGAAATGCTGAAGTGGTTCTTTCTGACATCACAATCAAGGATATTCAAATCAATTCTTCATCTATTGAGACTGGAGAGAATAGTATTGTTCTAGTAGCTTCAGGTGCCAGTGCCAATTTGAGTATGAAGTGGAGATATTCTTGCAGCACTTGGTTAATCCCAATTGGAATTTCAGATAGTGGGACAGCTTCAGTGGAGGTTGAAGGCATGCAAGTGGGGCTTGTAGTAAATTTAAGGAACCAAGAAGGAACTCTGAACTTGACTCTCTTAAACTATGGATGTCATGTGGGAGATTTATCTATAAAGTTGGACGGTGGTGCATCTTGGCTTTACCAATGGCTAGTAGGTGCTTTTGAAGGGAATATAGTATCTTCAATTGAAGAGGCCATTTCAGAGAAAATAAGAGAAGGGATAGGGGAGCTTGACAATTTTCTGCAATCTCTTCCGAAACAAATCCCATTAGACAAAACTGCTGCACTAAATGTTTCTTTCGTTGGGAATCCTGTTTTGAGTGATACCTCTGTTGCAGTTGCTATCAATGGTTTATTCACAGAGAGAAATGAAGTTTTAGTACCTCAAGATTACCAGAAAGGATTAATGATTTCTTCTGCCTGTGGTGGTTTACCAAAGATGATAAAGGTTTCAATACATGAAAATGTGTTCAACTCTGCTTCCCTAGTTTACTTCAATGCAGGCAAAATGCAATGGATTATTGATAAACTACCAGATCAGGCCATTTTGAACACTGCTGGATGGAGATTCATAGTTCCCCAATTATACAAGCAATATCCAAATGATGACATGCTGCTTAATGTCTCTGTAACTTCTCTACCAGTTATACAAGTGACCTACCAAGATATTGGTGCTACCATTTTTGTGGATATAACAATTGATGTTTTGGAAGGCGGTGAAGTCATACCTGTTGCATGCATCTCAGTGGTAATTAGTGTTTCATGTGATGTGGAAATCGTGGGAAACATGATTGTTGGTAGGTTCAGATTACAAACATTTTCTGCATACTTGAAATGGAGTAAAATAGGAAAACTGCACATACATCTGATTCAGTCACTGATGTCAGGTATCATCAAAACAGTCATCCTACCATATCTGAACTTCCAATCAAAGAGAGGAATCCCATTGCCAATTATTGATGGTTTTGAGTTTCGGCATACTAATATCTTGTACAATCCTCCATGGATTGCAGTGTGTAGTGATGTTTCGTACTTAGGAGACTACTATCTTAGTCAACAATCAGCTTATGTAGCATGA 1479 0.3888 MAPSILLILSSLLLVPTSGFVQPHGDGFIYGVISDKGLDYAKDLLIEKGIASILLLQLPEIENTFQVPFVGNAEVVLSDITIKDIQINSSSIETGENSIVLVASGASANLSMKWRYSCSTWLIPIGISDSGTASVEVEGMQVGLVVNLRNQEGTLNLTLLNYGCHVGDLSIKLDGGASWLYQWLVGAFEGNIVSSIEEAISEKIREGIGELDNFLQSLPKQIPLDKTAALNVSFVGNPVLSDTSVAVAINGLFTERNEVLVPQDYQKGLMISSACGGLPKMIKVSIHENVFNSASLVYFNAGKMQWIIDKLPDQAILNTAGWRFIVPQLYKQYPNDDMLLNVSVTSLPVIQVTYQDIGATIFVDITIDVLEGGEVIPVACISVVISVSCDVEIVGNMIVGRFRLQTFSAYLKWSKIGKLHIHLIQSLMSGIIKTVILPYLNFQSKRGIPLPIIDGFEFRHTNILYNPPWIAVCSDVSYLGDYYLSQQSAYVA* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02706 492 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 241 IPR017943 GO:0008289
Rops11g02706 492 PIRSF Lipid_binding_protein 3 482 IPR030675 GO:0005615|GO:0008289
Rops11g02706 492 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 248 478 IPR017943 GO:0008289
Rops11g02706 492 SMART bpi1_3 33 258 IPR017942 GO:0008289
Rops11g02706 492 Gene3D - 36 216 - -
Rops11g02706 492 Pfam LBP / BPI / CETP family, C-terminal domain 280 463 IPR001124 GO:0008289
Rops11g02706 492 SMART bpi2_2 276 481 IPR001124 GO:0008289
Rops11g02706 492 Pfam LBP / BPI / CETP family, N-terminal domain 37 209 IPR017942 GO:0008289
Rops11g02706 492 PANTHER OS06G0309200 PROTEIN 1 489 IPR045897 -
Rops11g02706 492 Gene3D - 33 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02706 Rops-Chr11 46587652 46592655 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02706 K05399 - gmx:100815362 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02706 11 46587652 46592655 Rops11g02706 11 46587652 46592655 ECH
Rops11g02706 11 46587652 46592655 Rops9g00289 9 3582002 3586642 PCT