Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00265 ATGGAGGGTAAAGGGTGGTTCTTTCATCAAGTTGGCTGTGTAACACTGGATTTATTTATCACTGTTTATCTCCTACTCTTTGATGGTAACAAGATAATAGCTATGGATATCTCAGACTGCACAAGGATTGTCTTGGATAGAATCCAGAAATTTGAGCCTGATCATGCCAGAAAAATAATTGGCTATCTCTTCTTGCAAGATCATGGTGAGCAAGAAATGGCGAAATTGGCTTCATGCCCTGACAATTTCATTCGTGAAGTGGTATTTAAGGCCAAAGCGGATCTTCAAAGGTTGGCCATTAAATCAGCCATGCTTCCAAATTCACTAACTGTCAACCCTCCACAAGGTTTAAACCATTTGTCAGTAATCTCCCCTAGAACTCCTACTTCACCACTGAACTTCCAGGTTCCCTCTCCCTATTGGGAGCCTCAGTCTGCTGGCAATACCAATCCAGACTATATGACAATGAATTACTTGGATTCTATCACAGAACTTCAGAAACAGACACAGTTGTTCAATTTGGAGAATCATATAGATCCTGTAAACACTGGAACACGAGGGGTTGCCAATGATTACTATGGCTTAGAAGCTTCTGCAGCCAATTTGGGTGGAAAAGCTGGCAGAAGGTTTTCAAGCCTGCCCGAATTTCCATTCAAGATCTGTCACTATTTCAACAAAGGATACTGTAAACATGGAGAAAGCTGTAGATACTATCATGGAGCTGTCAATGAGAACCTCTCTCAGATGTATGGAAATGATGCTGCTAATGAGGATCTAGTGGTTTCACCAGGGTCACTAGCACAGATAGAGTCAGAAATTATCGAGCTCTTAAAACAAAAAAGGGGAAGTCCAATGTCAATTGCTTCCCTGCCAATGGCATACTACGATAAATATAAAAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGCCAAAGACATGGGAAGTCTGGCTATAGTTTGACAAGGCTTCTTGACAAACTGAAAAGTATTCGGCTAATAGAAAGGCCTCATGGACAGCATGCAGTGGTTCTGGCAGAAGATGCTCCAAAATACATTCAAAAGGGAGATATTAGTGCATCAAGACAAATATATTTGACATTTCCAGCTGACAGCACTTTCACAGAGGAGGATGTCTCAAACTACTTCAGCACATTTGGGTGTGTTGAAGATGTTAGGATTCCATGCCAGCAGAGAAGGATGTTTGGATTTGTAACATTTGTTGATCCGGAAACTGTTAAAAGGATTTTGGATAAGGGGAATCCTCATTATGTTCGTGAGTCTCGAGTGCTTGTGAAACCTTACCGGGAGAAGGCAAAGGTTATGGAAAGGAAGTACCAACATAGAATTGAGCACCCTCTTTGTTGTTCACCACATTATGTAGACCTGGACTCTGAACTTAACTCAATTCCAAGAAGTGTTGGGAACCATAGATTTCTAAGGAGACAGCTGATGGAAGAGCAGGAACAAGCCCTTGAATTGCAGAGGAGACGTCTTGCTGAGCTGCAGTTTGCCCCAAAACCTTTGTCCACTTCACCTCCTTTTGGCTTCTCCATGGATGAGTTAAGAGTTTCAGATGATCATTTCAATTTCCAGCCTGCAGAATCTCTTTCTGCACTGAATGACAAAATCAAGCATACAGACACCAATTTCTCTGATGAGAACAACAATGAAGGACTCAATCTCCCAGACAGTCCATTTGCATTTCCAATATAG 1716 0.4161 MEGKGWFFHQVGCVTLDLFITVYLLLFDGNKIIAMDISDCTRIVLDRIQKFEPDHARKIIGYLFLQDHGEQEMAKLASCPDNFIREVVFKAKADLQRLAIKSAMLPNSLTVNPPQGLNHLSVISPRTPTSPLNFQVPSPYWEPQSAGNTNPDYMTMNYLDSITELQKQTQLFNLENHIDPVNTGTRGVANDYYGLEASAANLGGKAGRRFSSLPEFPFKICHYFNKGYCKHGESCRYYHGAVNENLSQMYGNDAANEDLVVSPGSLAQIESEIIELLKQKRGSPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTRLLDKLKSIRLIERPHGQHAVVLAEDAPKYIQKGDISASRQIYLTFPADSTFTEEDVSNYFSTFGCVEDVRIPCQQRRMFGFVTFVDPETVKRILDKGNPHYVRESRVLVKPYREKAKVMERKYQHRIEHPLCCSPHYVDLDSELNSIPRSVGNHRFLRRQLMEEQEQALELQRRRLAELQFAPKPLSTSPPFGFSMDELRVSDDHFNFQPAESLSALNDKIKHTDTNFSDENNNEGLNLPDSPFAFPI* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00265 571 ProSiteProfiles Zinc finger C3H1-type profile. 215 242 IPR000571 GO:0046872
Rops9g00265 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 240 IPR000571 GO:0046872
Rops9g00265 571 SUPERFAMILY CCCH zinc finger 218 240 IPR036855 GO:0046872
Rops9g00265 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 424 IPR000504 GO:0003723
Rops9g00265 571 CDD RRM_AtC3H46_like 364 433 IPR034365 -
Rops9g00265 571 Pfam OST-HTH/LOTUS domain 265 342 IPR025605 -
Rops9g00265 571 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 369 440 - -
Rops9g00265 571 SUPERFAMILY RNA-binding domain, RBD 372 446 IPR035979 GO:0003676
Rops9g00265 571 Gene3D - 362 441 IPR012677 -
Rops9g00265 571 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 35 570 - -
Rops9g00265 571 SMART c3hfinal6 217 241 IPR000571 GO:0046872
Rops9g00265 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 362 437 IPR000504 GO:0003723
Rops9g00265 571 ProSiteProfiles OST-type HTH domain profile. 265 348 IPR025605 -
Rops9g00265 571 Coils Coil 477 505 - -
Rops9g00265 571 Gene3D - 216 282 - -
Rops9g00265 571 SMART rrm1_1 363 433 IPR000504 GO:0003723
Rops9g00265 571 MobiDBLite consensus disorder prediction 548 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00265 Rops-Chr9 3323914 3329262 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00265 - - gmx:100818984 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00265 9 3323914 3329262 Rops9g00265 9 3323914 3329262 ECH
Rops11g02647 11 45340009 45344012 Rops9g00265 9 3323914 3329262 PCT