Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02647 ATGGATATTTCAGAGTACACAAGAATTGTTTTTGATAAACTTCAGCAATTTGAGCCTGAACATGCGACAAAGATTATTGGTTATCTCCTTCTACAAGACCATGGTGAGCAAGAAATGGTTAAATTGGCTTCATGTCCTGACCATTTAATCTGTGAAGTTGCGCTCAAGGCCAGAACTGAGCTTCAAAGGTTGGCGGTCAAATCTGTCATACTTCCGGTTTCACCCAATCCTCAACAAGATTTAAGGCATTTGTCTGTAATCTCTCCCAGCATTTCTACTTCAGCGGCGAGTTTCCAGGTTCCCTCTCCCTATTATGATTCACAATCTGCTAGCAATACTAATGCAGAGATTATGGCAATAGGATACTTGAATTCTATGACAGAACTTCAAAATTTGGAGAATCATATAGATTCTATAAATTCTGGGACTCCTAAAATTGCCAATGATTACTATGGTTTAGATGCTTCAGGTGGCACTTTGGGTGGAAAAGCTGGTAGAAGGTTTTCAAGCCTTCATGAATTTCCAGTCAAGACCTGTCACTATTTTAACAAAGGATATTGTAAGCATGGATGGAGCTGTAGATATCACCATGCACAGGTTGTCCCTGAAATATTTGCTCAGATGTATGGAAATGATACTCTTAATGATGATGAGGCAATTTCACCAGGGTCACTAGCTCAGTTAGAGTCAGAAATTGTCGAGCTCCTGAAACAAAAAGGTCATCCTATTTCAATTGCTTCTCTTCCAATGGCATACTATGATAAATATAAAAAGGTACTGCAGGCAGAAGGCTACCTAACTGAGAGTCAGAGACATGGTAAGTCTGGTTACAGTTTGACAAGGCTTCTTACCAAGTGGAAAAATCGTATTCGGCTAATTGAGAGCAGGCCTCATGGGCAGCATGCAGTGGTTTTGGCAGAAGATGCTCCAAAATTCACAGGAAAGGGAGATTTTGGACAAAATATTAGTGCAGCACGACAAATATACCTGACATTTCCAGCTGACAGCACTTTCACAGAGGAGGATGTCTCGAACTACTTCAGTACTTTTGGATGTGTTGAAGATGTAAGGATTCCATGCCAACAGAGAAGGATGTTTGGATTTGTGACATTTGTTGATTCAGAAACTGTTAAGATGATTTTGGAAAAGGGAAATCCCCATTGTGTTCGTGGATCTCAGGTCCTTGTGAAACCTTACAAGGAGAAGCCTAAACTTACTGACAGGAAATACCCACATAGAATCGAGCATCCTGTTTGTTATTCACCACAACAATATGTAGATATTGACACTGAACTTAACTCGATTCCAAGAAGTTTTGGGAACCCTCGATTTCTGAGGAGGCTGCTCCTTGAAGAGCAAGAACAGGCCCTTGAATTTCAGAGAAGGCGTCTTGTGCAGCTGCAACTGGCCCAAAAATCTTTGTCCATTCCACGCCATTTAGGCATCAACATGGATGGATTAAAAGTTTCAGATGATCATTTCAATTTCCATCCTGCAGAATCTTTCAGTTATGAGCCAAATGAAAAACCCAAGCACACAGATGCCAATCACACTGATGAGGACAGCAATCAAGGACTGAATCTCCCGGATAGCCCGTTTGCATTTCCAGTAGATAGTGGAATTTCAGCAGTCATGTAG 1638 0.4103 MDISEYTRIVFDKLQQFEPEHATKIIGYLLLQDHGEQEMVKLASCPDHLICEVALKARTELQRLAVKSVILPVSPNPQQDLRHLSVISPSISTSAASFQVPSPYYDSQSASNTNAEIMAIGYLNSMTELQNLENHIDSINSGTPKIANDYYGLDASGGTLGGKAGRRFSSLHEFPVKTCHYFNKGYCKHGWSCRYHHAQVVPEIFAQMYGNDTLNDDEAISPGSLAQLESEIVELLKQKGHPISIASLPMAYYDKYKKVLQAEGYLTESQRHGKSGYSLTRLLTKWKNRIRLIESRPHGQHAVVLAEDAPKFTGKGDFGQNISAARQIYLTFPADSTFTEEDVSNYFSTFGCVEDVRIPCQQRRMFGFVTFVDSETVKMILEKGNPHCVRGSQVLVKPYKEKPKLTDRKYPHRIEHPVCYSPQQYVDIDTELNSIPRSFGNPRFLRRLLLEEQEQALEFQRRRLVQLQLAQKSLSIPRHLGINMDGLKVSDDHFNFHPAESFSYEPNEKPKHTDANHTDEDSNQGLNLPDSPFAFPVDSGISAVM* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02647 545 MobiDBLite consensus disorder prediction 498 533 - -
Rops11g02647 545 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 537 - -
Rops11g02647 545 Coils Coil 450 470 - -
Rops11g02647 545 SMART rrm1_1 327 397 IPR000504 GO:0003723
Rops11g02647 545 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 333 404 - -
Rops11g02647 545 CDD RRM_AtC3H46_like 328 397 IPR034365 -
Rops11g02647 545 Gene3D - 332 405 IPR012677 -
Rops11g02647 545 SUPERFAMILY RNA-binding domain, RBD 337 427 IPR035979 GO:0003676
Rops11g02647 545 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 393 IPR000504 GO:0003723
Rops11g02647 545 ProSiteProfiles Zinc finger C3H1-type profile. 173 200 IPR000571 GO:0046872
Rops11g02647 545 MobiDBLite consensus disorder prediction 504 519 - -
Rops11g02647 545 Pfam OST-HTH/LOTUS domain 224 301 IPR025605 -
Rops11g02647 545 ProSiteProfiles OST-type HTH domain profile. 224 308 IPR025605 -
Rops11g02647 545 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 401 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02647 Rops-Chr11 45340009 45344012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02647 - - gmx:100806206 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02647 11 45340009 45344012 Rops11g02647 11 45340009 45344012 ECH
Rops11g02647 11 45340009 45344012 Rops9g00265 9 3323914 3329262 PCT