Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00232 ATGAAAGTTATGGTGAGAGGGCGCTTCTTTATCATTCCAACACCAAAACAATGGTCCCTTCTCTCTGTTCGTCACCACCACACAACTCATCTTTTCTCTCCTCTCTCTTCACCCTCCATGTCTGTGCCTGCTTGTGTTGATGCTTCAAGGCCACTTTCCCGGGGCTACTCAAAAATCTTCCAACCCAGTTTCGCTGATCCTGTTCCCTCCTTGCCCATTTCCAAATATGGAGTCAAAGTCAACACCTTGCACACTCGTCCACTTGTAGAGGAAGTTGAAGCTGATGATGTTGGAGATGATTTGTGGGTGAAGATGCAAAACGAAGCTAGAGTTGATGTTACTATGGAGCCTATTTTGTCTAATTACTATCAAAGCTCCATTTTGTCTCATAAATCTTTGGAAAGTGCTTTGGCTAATCACCTTGCTTTGAAATTGAGCAATGCAAGCCTTCCAAGTGGTACCCTTTGTGATCTTTTTGTTGGAGTTTTGGAAGCTGACAAGAACATCGTGGATGCTGTGAAGGATGATTTGAGGGCAGTGAAGGAAAGAGACCCTGCTTGCCTAAGCCATGTCCATTGCTTCTTGAATTTCAAAGGCTTTTTGGTATGCCAAGCTCATAGGGTGGCTCACAAATTGTGGTCAGAGGGGAGGGAGGTTTTGGCAGTCATGATTCAGAATAGAGTTTCTGAAGTTTTTGCAGTGGATATTCATCCAGCAGCAAAGATTGGAAGTGGGATTTTACTGGATCATGCAACTGGTATTGTGGTGGGAGAGACTGCTGTGATTGGGAATAATGTGTCAATTTTGCATAGTGTGACTTTGGGAGGGACTGGTAAGGCCTCTGGGGACAGGCATCCAAAGATTGGTGATGGGGTGCTGATAGGTGCAGGAACTTGTATTTTGGGGAATATTAAGATTGGTGATGGGGCTAAAATTGGTGCTGGTTCTGTGGTGATAAAGGATGTGCCTCCAAGGACTACAGTTGTTGGGAACCCAGCTAAGTTGGTAGGAGGGAAGAACAACCCCATTAAATTGGATAAGATTCCTAGCTTCACCATGGATCATACTTCAAATATTTCAGAGTTTTATGATTATTGTGTTTAG 1104 0.4393 MKVMVRGRFFIIPTPKQWSLLSVRHHHTTHLFSPLSSPSMSVPACVDASRPLSRGYSKIFQPSFADPVPSLPISKYGVKVNTLHTRPLVEEVEADDVGDDLWVKMQNEARVDVTMEPILSNYYQSSILSHKSLESALANHLALKLSNASLPSGTLCDLFVGVLEADKNIVDAVKDDLRAVKERDPACLSHVHCFLNFKGFLVCQAHRVAHKLWSEGREVLAVMIQNRVSEVFAVDIHPAAKIGSGILLDHATGIVVGETAVIGNNVSILHSVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVIKDVPPRTTVVGNPAKLVGGKNNPIKLDKIPSFTMDHTSNISEFYDYCV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00232 367 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 294 322 IPR018357 GO:0016740
Rops9g00232 367 Gene3D serine acetyltransferase, domain 1 85 234 IPR042122 -
Rops9g00232 367 Pfam Serine acetyltransferase, N-terminal 101 205 IPR010493 GO:0005737|GO:0006535|GO:0009001
Rops9g00232 367 FunFam Serine acetyltransferase 235 361 - -
Rops9g00232 367 PANTHER SERINE ACETYLTRANSFERASE 93 366 - -
Rops9g00232 367 SMART SATase_N_2_a 101 205 IPR010493 GO:0005737|GO:0006535|GO:0009001
Rops9g00232 367 SUPERFAMILY Trimeric LpxA-like enzymes 101 337 IPR011004 -
Rops9g00232 367 Gene3D Hexapeptide repeat proteins 235 355 - -
Rops9g00232 367 Pfam Bacterial transferase hexapeptide (six repeats) 285 319 IPR001451 -
Rops9g00232 367 Pfam Hexapeptide repeat of succinyl-transferase 252 268 IPR001451 -
Rops9g00232 367 CDD LbH_SAT 232 332 IPR045304 -
Rops9g00232 367 NCBIfam serine O-acetyltransferase 173 334 IPR005881 GO:0005737|GO:0006535|GO:0009001
Rops9g00232 367 FunFam serine acetyltransferase 1, chloroplastic 82 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00232 Rops-Chr9 2829845 2831287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00232 95 365 Miscellaneous Gene Families AT2G17640 53.137 2.70e-93 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00232 K00640 - gmx:100820316 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00232 9 2829845 2831287 Rops9g00232 9 2829845 2831287 ECH
Rops11g02615 11 44765117 44766481 Rops9g00232 9 2829845 2831287 PCT