Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00200 ATGTCGGAAAAGGGTCGGCCACTACCAAAGTTTGGTGAATGGGATGTCAATGATCCAGCTTCGGCTGAAGGTTACACGGTGATTTTTAACAAAGCTAGGGATGAGAAAAAGACAGGTGGCAAACCTGAGTCACCTGTAAAGAAGGATCCTCAAACCAGACCTCCATTAGATCCTGGCAAAACTCAGAGCAAAAGTTGGTTTTGCTGCATACAAAGTCCTCATGCGGAATCATAA 234 0.4487 MSEKGRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPESPVKKDPQTRPPLDPGKTQSKSWFCCIQSPHAES* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00200 77 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 68 IPR040387 -
Rops9g00200 77 MobiDBLite consensus disorder prediction 31 54 - -
Rops9g00200 77 MobiDBLite consensus disorder prediction 56 77 - -
Rops9g00200 77 MobiDBLite consensus disorder prediction 31 77 - -
Rops9g00200 77 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00200 Rops-Chr9 2547624 2550239 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00200 - - lja:Lj2g3v3303460.1 144.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00200 9 2547624 2550239 Rops9g00200 9 2547624 2550239 ECH
Rops11g02569 11 43795816 43799233 Rops9g00200 9 2547624 2550239 PCT