Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02569 ATGTCGGAAAAGGGTCGGCCACTACCAAAATTTGGTGAATGGGATGTCAATGATCCAGCCTCAGCTGAGGGGTTCACAGTGATTTTTAATAAGGCCAGGGATGAGAAAAAGACAGGTGGCAATCCTGAGTCACCTGGAAAGACTGCCACTGATCCTCATAGCAAACCCGCATTAGACCATGGCAAACCTCAGAGTAAAAAATGGTTTTGCTGCATACAAAACCCTCCTGCAGAATCATAG 240 0.4625 MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPGKTATDPHSKPALDHGKPQSKKWFCCIQNPPAES* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02569 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Rops11g02569 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 70 IPR040387 -
Rops11g02569 79 MobiDBLite consensus disorder prediction 30 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02569 Rops-Chr11 43795816 43799233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02569 - - gmx:100305826 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02569 11 43795816 43799233 Rops11g02569 11 43795816 43799233 ECH
Rops11g02569 11 43795816 43799233 Rops9g00200 9 2547624 2550239 PCT