Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04254 ATGAAATCAGCAAAGGAAAGAAGGAAGGAGGGACAGGAGGAGATTGCACCGTGCATATGGGATTTTGCTTATGTGGCTATTTTTACACAAAACAAGAAAGTCACATTCAATTTGAAAACTACCATTAATCACTTCGCCGGGATCCCATGCGGGGCCCCACTCTGCCGGAAACTGGACTCTTCCGGATGCAACAAGAAGAAGGTTTGCCAGTACCAGGTTTCCTACGGTGATGGCTCGTTCACTTTCGGTGATTTCTCAACTGAAACGCTGACGTTTCGAAGGACTAAGGTTCCGCGCGTGGCCCTAGGATGCGGACACGACAACGAAGGACTCTTTGTCGGTGCTGCGGGTTTGTTAGGTCTCGGTCGTGGGCTATTGTCGTTTCCGGTTCAAACCGGTCGCCGGTTCAACCAGAAATTCTCTTATTGCCTAGTGGACCGGTCCGCTTCGGCCAAACCCTCTTCTTTTGTTTTTGGTGACTCGGCCGTTTCTCGAACCGCCCGGTTCACTCCGCTTCTCAAAAACCCTAAACTCGACACCTTCTATTATGTTGAACTTCTCGGGATTAGCGTCGGTGGTGCTCCCGTTCGCGGCGTCTCCCCCTCGCTCTTCCGCCTCGATCGCGCCGGGAACGGGGGCGTTATCATCGATTCGGGTACGTCCGTGACCCGTTTGACCCGACCTGCATACATCGCTTTAAGAGACGCTTTTCGGGTCGGGGCTTCACATCTGAAACGTGCGCCGGAGTTTTCGCTATTTGATACTTGCTTCGACCTGTCGGGGCTGATGGAGGTGAAGGTTCCGACGGTGGTGCTGCATTTCCGCGGTGCTGACGTGTCGTTACCGGCGACGAATTACTTGATTCCGGTGGATAACAGTGGGAGCTTCTGCTTCGCTTTCGCCGGAACAATGAGCGGCTTGTCCATTATTGGTAACATCCAGCAACAAGGGTTTCGGGTCGTGTTTGACTTGGCGGGTTCACGGATCGGGTTTGCCCCGAGAGGTTGCGCGTGA 1014 0.5355 MKSAKERRKEGQEEIAPCIWDFAYVAIFTQNKKVTFNLKTTINHFAGIPCGAPLCRKLDSSGCNKKKVCQYQVSYGDGSFTFGDFSTETLTFRRTKVPRVALGCGHDNEGLFVGAAGLLGLGRGLLSFPVQTGRRFNQKFSYCLVDRSASAKPSSFVFGDSAVSRTARFTPLLKNPKLDTFYYVELLGISVGGAPVRGVSPSLFRLDRAGNGGVIIDSGTSVTRLTRPAYIALRDAFRVGASHLKRAPEFSLFDTCFDLSGLMEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVVFDLAGSRIGFAPRGCA* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04254 337 SUPERFAMILY Acid proteases 45 336 IPR021109 -
Rops8g04254 337 Pfam Xylanase inhibitor N-terminal 42 160 IPR032861 -
Rops8g04254 337 Gene3D Acid Proteases 157 337 IPR021109 -
Rops8g04254 337 FunFam Aspartyl protease family protein 2 160 336 - -
Rops8g04254 337 Gene3D Acid Proteases 21 156 IPR021109 -
Rops8g04254 337 PANTHER ASPARTYL PROTEASES 35 330 IPR001461 GO:0004190|GO:0006508
Rops8g04254 337 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 214 225 IPR001969 GO:0004190|GO:0006508
Rops8g04254 337 ProSiteProfiles Peptidase family A1 domain profile. 21 332 IPR033121 -
Rops8g04254 337 Pfam Xylanase inhibitor C-terminal 182 332 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04254 Rops-Chr8 85154127 85156789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04254 43 336 Miscellaneous Gene Families AT1G77480 27.217 2.33e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04254 K22683 - gmx:100794269 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04254 8 85154127 85156789 Rops4g01639 4 39789985 39791592 PCT