Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01639 ATGTGGGTCCCCACTCTGCCGGCGGTTAGACTCGTCGGGATGCAACCAGAAAAACGTTTGCCAGTACCAGGGGACCGGTCCGCTTCAGCTAAACCGTCTTCTATTGTTTTTGGTGACTCAGCAATCCCCCGAACCGCCCGGTTCACTCCTTTGTTAAGAAACCCTAAACTCGACACGTTTTATTTTGTTGAACTTCTTGGCATTAGTGTGGGTGGCAAACCGGTTCGTGAGATTTCTCCTTCTTTGTTCCGGTTCGACCGAACCGGAACCGGTGGAGTTATTATCGACTCGGGGACTTCCGTGACCCGGTTAACTACCACTGCTTACGTGGCACTCAGAAACGCTTTTCGGGTCGGGGCAACCCATTTGAAGCGGGCACCCGAGTTCTCTTTGTTTGACACGTGTTTTGACCTTTCGGGGCTGTCCGAGGTTAAGGTTCCCACGGTGGTGTTGCATTTCCGGGGTGCTGACATGTCATTGCCGGCGTCGAATTACCTGATTCCGGTGGATAATAGTGGGAGCTTCTGCTTTGCCTTTGCCGGAACAATGAGTGAGTTGTCTATAATTGGTAATATCCAGCAACAAGGGTTCCGTGTCGTGTTTGACTTGGCGGGTTCTCGGGTCGGGTTTGCCCCGCGAGGGTGCGCGTGA 651 0.53 MWVPTLPAVRLVGMQPEKRLPVPGDRSASAKPSSIVFGDSAIPRTARFTPLLRNPKLDTFYFVELLGISVGGKPVREISPSLFRFDRTGTGGVIIDSGTSVTRLTTTAYVALRNAFRVGATHLKRAPEFSLFDTCFDLSGLSEVKVPTVVLHFRGADMSLPASNYLIPVDNSGSFCFAFAGTMSELSIIGNIQQQGFRVVFDLAGSRVGFAPRGCA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01639 216 Gene3D Acid Proteases 38 216 IPR021109 -
Rops4g01639 216 Pfam Xylanase inhibitor C-terminal 61 211 IPR032799 -
Rops4g01639 216 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 93 104 IPR001969 GO:0004190|GO:0006508
Rops4g01639 216 FunFam Aspartyl protease family protein 2 39 215 - -
Rops4g01639 216 ProSiteProfiles Peptidase family A1 domain profile. 1 211 IPR033121 -
Rops4g01639 216 SUPERFAMILY Acid proteases 32 215 IPR021109 -
Rops4g01639 216 PANTHER ASPARTYL PROTEASES 31 209 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01639 Rops-Chr4 39789985 39791592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01639 82 215 Miscellaneous Gene Families AT1G77480 29.605 4.06e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01639 K22683 - gmx:100791511 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01639 4 39789985 39791592 Rops4g01639 4 39789985 39791592 ECH
Rops8g04254 8 85154127 85156789 Rops4g01639 4 39789985 39791592 PCT