Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04029 ATGGACACTAAAACCAGTGAATTTTCAAGCCCTCTGCTTTCCGTGGAATCACAAGGCTATGGCGGCAATAAGGGAACTTGTTCTATACCACTTACTCTTACATTCAGCACCCTTGTTGCTGTTTTAGGTTCTTACGTATTTGGAGCTGCTGTGGGATATTCATCTCCTACCCAATCTGGAATCATGAATGACCTCAACCTCGGTGTGGCCCAGTATTCAATTTTCGGTTCAATATTGACGATTGGAGCCATGATTGGTGCCATTGTGAGTGGTAGAATAGCAGATTATGCAGGTCATCGAGTTGCCATGGGATTCTCGGAGTTATTCTGCATCTTGGGATGGCTTGCCATAACATTCTCAAAGGTCGCTTGGTGGCTTTACGTTGGAAGATTATTGGTAGGATGTGGGATTGGCCTGCTATCTTACGTGGTACCAGTTTATGTAGCTGAAATAACTCCCAAGAATCTTCGAGGGGGATTCACCGCAGTTCATCAGTTAATGATTTGTTGTGGGATGTCACTGGCTTACCTTATTGGAGCATATGCCAATTGGCGGATTTTGGCACTAATAGGAACTATTCCATCTCTTGTACAGCTTCTGAGTCTTCCCTTCATCCCTGATTCTCCTAGGTGGCTGGCAAAGGTCGGTCGCTTGAAAGAGAGTGATTCTGCTTTACAGCGCCTTAGGGGGAAGAATGCTGATGTTTATCAAGAGGCCACTGAAATTAGAGATTATACAGAAACCCTGCAGCGGCAAACAGAAGCTAGCATTATTAGCTTATTTCAATTGCAGTATTTGAAGTCACTTACTGTAGGAGTTGGCTTGATGATACTGCAACAGTTTGGAGGGATTAATGGCATTGTTTTTTACGCAAACTCTATATTTATCTCTGCTGGGTTTTCAGAAAGTATTGGAACAATAGCAATGGTTGTTGTTAAGATCCCAATGACAACTTTGGGAGTACTTTTGATGGATAAATCTGGAAGAAGACCACTTTTGCTGATGTCTGCAATGGGAACATGCATAGGATGCTTCCTCGCAGCCCTATCATTCGTCTTGCAGGACTTACATCAATGGAAGGGAGTCAGTCCAATTCTGGCACTTGTTGGTGTTCTGGTATATGTAGGATCTTTCTCACTAGGCATGGGAGCAATTCCCTGGGTTATAATGTCTGAGATATTTCCTATCAATGTGAAGGGTTCTGCTGGAAGCCTTGTAACCTTGGTCAATTGGTTGTGTTCTTGGATTGTATCATATGCTTTTAACTTCCTCATGAGTTGGAGTTCAACAGGAACTTTCTTCATATTCTCTAGCATATGTGGTTTCACTGTTCTATTCGTAGCAAAACTAGTACCAGAGACCAAGGGGCGTACACTAGAAGAAATTCAAGTTTCTTTGAATTCATATTCAACAAAGAGATGA 1422 0.4248 MDTKTSEFSSPLLSVESQGYGGNKGTCSIPLTLTFSTLVAVLGSYVFGAAVGYSSPTQSGIMNDLNLGVAQYSIFGSILTIGAMIGAIVSGRIADYAGHRVAMGFSELFCILGWLAITFSKVAWWLYVGRLLVGCGIGLLSYVVPVYVAEITPKNLRGGFTAVHQLMICCGMSLAYLIGAYANWRILALIGTIPSLVQLLSLPFIPDSPRWLAKVGRLKESDSALQRLRGKNADVYQEATEIRDYTETLQRQTEASIISLFQLQYLKSLTVGVGLMILQQFGGINGIVFYANSIFISAGFSESIGTIAMVVVKIPMTTLGVLLMDKSGRRPLLLMSAMGTCIGCFLAALSFVLQDLHQWKGVSPILALVGVLVYVGSFSLGMGAIPWVIMSEIFPINVKGSAGSLVTLVNWLCSWIVSYAFNFLMSWSSTGTFFIFSSICGFTVLFVAKLVPETKGRTLEEIQVSLNSYSTKR* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04029 473 PRINTS Sugar transporter signature 127 146 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g04029 473 PRINTS Sugar transporter signature 279 289 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g04029 473 PRINTS Sugar transporter signature 44 54 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g04029 473 PRINTS Sugar transporter signature 368 389 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g04029 473 PRINTS Sugar transporter signature 391 403 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g04029 473 ProSiteProfiles Major facilitator superfamily (MFS) profile. 36 455 IPR020846 GO:0022857
Rops8g04029 473 FunFam sugar transporter ERD6-like 6 27 466 - -
Rops8g04029 473 PANTHER - 32 463 - -
Rops8g04029 473 Pfam Sugar (and other) transporter 69 464 IPR005828 GO:0016020|GO:0022857|GO:0055085
Rops8g04029 473 SUPERFAMILY MFS general substrate transporter 38 463 IPR036259 -
Rops8g04029 473 Gene3D MFS general substrate transporter like domains 26 468 IPR036259 -
Rops8g04029 473 NCBIfam sugar porter family MFS transporter 69 462 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g04029 473 CDD MFS_GLUT6_8_Class3_like 35 461 IPR044775 GO:0008643|GO:0051119
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04029 Rops-Chr8 81816956 81821539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04029 39 397 Organic Solute Cotransporters AT1G54730 69.359 6.46e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04029 K03444 - gmx:100817150 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02956 8 66267180 66272872 Rops8g04029 8 81816956 81821539 ECH
Rops8g04029 8 81816956 81821539 Rops8g04029 8 81816956 81821539 ECH