Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02956 ATGGCAATCCAAGAGGATGTGGAGGATGGTGTGCAGAAAGGATTCAGAGAACCACTGATTGGGGAACAGAACAACCAGCTGGTCCATGCAAGCAAAGGGCATCCATGGATTGTTTACTTCACTACATTTGTTGCTGTCTGTGGTTCTTATGAATTTGGGGCTTGTGCTGGATATTCATCTCCCACTCAAGATGCTATCAGGAAGGATCTCAGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCCATCTTGACTTTTGGTGCGATGATTGGCGCAATAACAAGTGGGCCTATTGCTGATTTTATTGGAAGAAAGGGGGCAATGAGAGTGTCAAGTGCCTTCTGTATTGCAGGGTGGCTTGTTATTTACTTCTCTGAGGGCCCAGTACCTTTGGACATTGGGAGGCTAGCCACAGGATATGGAATGGGAGTCTTTTCATATGTGGTTCCTGTCTTCGTAGCAGAAATTGCACCTAAAGAACTCCGTGGGGCGCTGACTACCTTAAATCAGTTCATGATTGTTACTGCAGTATCTGTGGCATTCATAATTGGAACAGTACTTCCATGGCGGGCTTTAGCTTTAACTGGCCTCATTCCCACTGCTATATTGCTTTTGGGTTTGTTTTTCATTCCGGAGTCTCCTAGATGGCTGGCAAAGAGAGGACGTGCAAAAGATTTTGAGGCAGCACTGCAAATACTCCGTGGCAAAGATGCTGATATATCTGAAGAGGCAGAGGAAATTCAGGATTATATAACTACTTTAGAACGGCTGGCAAAACCCAAGCTGCTGGACTTGTTTCAAAGAAGATATTTGCGCTCAGTCACTATTGGAGTAGGGCTTATGGTCTGCCAGCAATTTGGGGGAATCAACGGAATTTGCTTTTATGCTAGCAGTATTTTTGAGCTAGCAGGATTTTCTTCCAGCATCGGGACAATAATATATGCTTGCCTTCAGATTGTGGTCACAGGTCTTGGAGCAGCCTTCATAGATAAAGCTGGCAGGAAGCCCCTACTACTGCTATCTGGATCGGGATTGGTTGCAGGATGTATATTTACAGCAGTTGCATTCTATCTTAAGGTTCACGAGGTGGGTGTGGGGGCAGTCCCAGCACTTGCTGTAACTGGCATACTGGTTTACATAGGATCATTTTCAATAGGGATGGGAGCAATTCCATGGGTTGTGATGTCTGAGATATTTCCCGTGAATATTAAAGGCCAGGCAGGAAGCATAGCCACATTAGTGAATTGGTTTGGTGCATGGTTATGTTCCTATACTTTCAACTTTCTCATGAGCTGGAGCTCCTATGGTACCTTCATTCTTTATGCTGCAATCAATGCCCTAGCTATATTATTTATAATTGTAGCGGTACCAGAAACCAAGGGTAAAAGCCTGGAACAATTACAAGCAGCCATTAATGCGTAG 1422 0.4466 MAIQEDVEDGVQKGFREPLIGEQNNQLVHASKGHPWIVYFTTFVAVCGSYEFGACAGYSSPTQDAIRKDLSLSLAEYSLFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSAFCIAGWLVIYFSEGPVPLDIGRLATGYGMGVFSYVVPVFVAEIAPKELRGALTTLNQFMIVTAVSVAFIIGTVLPWRALALTGLIPTAILLLGLFFIPESPRWLAKRGRAKDFEAALQILRGKDADISEEAEEIQDYITTLERLAKPKLLDLFQRRYLRSVTIGVGLMVCQQFGGINGICFYASSIFELAGFSSSIGTIIYACLQIVVTGLGAAFIDKAGRKPLLLLSGSGLVAGCIFTAVAFYLKVHEVGVGAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGQAGSIATLVNWFGAWLCSYTFNFLMSWSSYGTFILYAAINALAILFIIVAVPETKGKSLEQLQAAINA* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02956 473 CDD MFS_GLUT6_8_Class3_like 39 466 IPR044775 GO:0008643|GO:0051119
Rops8g02956 473 PRINTS Sugar transporter signature 396 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g02956 473 PRINTS Sugar transporter signature 373 394 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g02956 473 PRINTS Sugar transporter signature 132 151 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g02956 473 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g02956 473 Pfam Sugar (and other) transporter 49 469 IPR005828 GO:0016020|GO:0022857|GO:0055085
Rops8g02956 473 SUPERFAMILY MFS general substrate transporter 41 467 IPR036259 -
Rops8g02956 473 FunFam sugar transporter ERD6-like 6 32 471 - -
Rops8g02956 473 Gene3D MFS general substrate transporter like domains 31 472 IPR036259 -
Rops8g02956 473 ProSiteProfiles Major facilitator superfamily (MFS) profile. 37 460 IPR020846 GO:0022857
Rops8g02956 473 PANTHER - 32 468 - -
Rops8g02956 473 ProSitePatterns Sugar transport proteins signature 1. 95 112 IPR005829 GO:0016020|GO:0022857|GO:0055085
Rops8g02956 473 NCBIfam sugar porter family MFS transporter 47 466 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops8g02956 473 ProSitePatterns Sugar transport proteins signature 1. 325 342 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02956 Rops-Chr8 66267180 66272872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02956 1 472 Organic Solute Cotransporters AT5G18840 58.664 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02956 K03444 - gmx:100785248 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02956 8 66267180 66272872 Rops8g04029 8 81816956 81821539 ECH
Rops8g02956 8 66267180 66272872 Rops8g02956 8 66267180 66272872 ECH
Rops8g02956 8 66267180 66272872 Rops8g04027 8 81797384 81798316 ECH