Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03904 ATGTGGCTGTATCCAAAGATTTTGGGTTATGATCCTTCTGAAAGATGGGGGCACTCTGCTTGCTTCTCCAATGGGCTTATGTATGTTTTTGGGGGTTGTTGTGGGGGAATGCATTTTAGCGATGTTCTCACTTTGGACCTTGACAAAATGGTTTGGAGCAAGCTTGCTACCACTGGTGAAAAGCCAGGTCCTAGAGATAGCCATAGTGCTGTTCTTGTAGGGCACAAAATGATAGTGTTTGGTGGCACAAATGGCTTCAAGAAAGTGAATCATATTCATATATTGGATCTTGTTACCAAAGAGTGGGTTAGTCCTGAATGTAAAGGGACCCCTCCTTCTCCACGTGAAAGCCATACTGCCACCCTAGTTGGTGATGAAAGATTAGTGATTTTTGGTGGTAGTGGAGAAGGTAATGCAAACTATTTAAATGATTTGCATATTCTTGATCTTCGAACCATGAGATGGACTTCTCCTGAGTTGAAAGGCGATTCGCCTGTCCCTAGGGACAGTCATAGTACCCTTACAATTGGGAACAATCTTATTGTGTATGGTGGAGACTCTGCTGATCAGTATCATGGCAATGTGCATATGCTTGATATGGCAACAATGACATGGTCTAGGTTGACAATTCAAGGTTCTTCACCAGGAGCAAGGGCAGGCCATGCTGCAGTTAATATTGGAACTAAGGTCTATGTCATCGGAGGGGTTGGAGATAAACGTTACTATAATGATGTTTGGATCTTTGATCTCTGCACTTGTTCATGGACTCAACTTAATATACATGGTCAACTGCCACAAGGGCGATTTTCTCATACAGCTGTTGTTGCAAACAATGATATTGCCATATATGGCGGGTGTGGGGAAGATGAACGTCCACTCAATGAGTTGTTAGTGTTGCAGCTTGGAGCAGAGCATCCAAATGGACGTTATTACAATTCCATGTGCAAAGTTTGGAATCAAGAAAAGAAGATTATCCCAGAAAGAGCAGATACCAACTTGAAAACTACACTAGTGGGGAATGATAATGTGGAAGTTTTAGGAAAAGGAGCTTGTGAAGTAGTATCAGAAAAAGCACCATCTTTTCATTTTGATTCAGGTACTTCCCTGCAGAAGAGGAGGAGAATTGCTGCTGGGAAGGTGTGGGATCTTGAATCAGAACAAGAAGAACATTTTCTTTCATTGTCCCTGCATTTATCTCCATCATCTCAATCTGATCAACAACAATCCCCAGGTCAAAAAGGACATACTTCTCTCATGGATTCTCAGCAGTATGTTGTGCTCAAACATACAAATCAAATTCCAACCAATTGCCAACATGACAATGGCTCAAGTAATAAGAGAGTTTTGAAGAATATCCCACAAAGAAGTTCACAAGATCTTCATTTCCTAGAACATCAACTAAGACAAGAACAGTGTCTTCACGGTCATGATGATAGTAGAAAAGGAGCTCAACATGAGGCCATCTGGCGAGGACCCATTCAACACCTGATTGGTGCTGAAGTTAGGGGGAAAGTTGATGGTGCCTGTGACTCAGGTTCATTCTTGCCTGCAGCAGCTATGAATGGAAGGACTTTCAGGGGAGTCTTATTTGCACCTCAGGGAGCAGGAGTTGTCTCAAGGGGGGCTAGTGTTGAACCATATTGTTCTCTAACTAGATCATTTCCTCAACCATTTATGAACGCAAATCACGTGGATAATTTAAGGGCTTCTCAACATGTAGCTATTTGTCAGCATGCAGAGTCTTGCTATGTTTCTAGGCAAGTTCCAGTTGCTCCACCATTTCCAATCATGCGAGGCACTCCAACTATGTCGAAGGAGCATAAAATCAGAAGTGATCTTAAAGGGTTGGTTTTAACACTTGGAGGACCTGCTAGTGGAAATCCTTAG 1887 0.4245 MWLYPKILGYDPSERWGHSACFSNGLMYVFGGCCGGMHFSDVLTLDLDKMVWSKLATTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNHIHILDLVTKEWVSPECKGTPPSPRESHTATLVGDERLVIFGGSGEGNANYLNDLHILDLRTMRWTSPELKGDSPVPRDSHSTLTIGNNLIVYGGDSADQYHGNVHMLDMATMTWSRLTIQGSSPGARAGHAAVNIGTKVYVIGGVGDKRYYNDVWIFDLCTCSWTQLNIHGQLPQGRFSHTAVVANNDIAIYGGCGEDERPLNELLVLQLGAEHPNGRYYNSMCKVWNQEKKIIPERADTNLKTTLVGNDNVEVLGKGACEVVSEKAPSFHFDSGTSLQKRRRIAAGKVWDLESEQEEHFLSLSLHLSPSSQSDQQQSPGQKGHTSLMDSQQYVVLKHTNQIPTNCQHDNGSSNKRVLKNIPQRSSQDLHFLEHQLRQEQCLHGHDDSRKGAQHEAIWRGPIQHLIGAEVRGKVDGACDSGSFLPAAAMNGRTFRGVLFAPQGAGVVSRGASVEPYCSLTRSFPQPFMNANHVDNLRASQHVAICQHAESCYVSRQVPVAPPFPIMRGTPTMSKEHKIRSDLKGLVLTLGGPASGNP* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03904 628 Gene3D - 107 370 IPR015915 GO:0005515
Rops8g03904 628 Gene3D - 6 106 IPR015915 GO:0005515
Rops8g03904 628 SMART kelc_smart 127 178 IPR006652 GO:0005515
Rops8g03904 628 SMART kelc_smart 26 75 IPR006652 GO:0005515
Rops8g03904 628 SMART kelc_smart 229 278 IPR006652 GO:0005515
Rops8g03904 628 SMART kelc_smart 179 228 IPR006652 GO:0005515
Rops8g03904 628 Pfam Galactose oxidase, central domain 267 300 - -
Rops8g03904 628 Pfam Galactose oxidase, central domain 217 266 - -
Rops8g03904 628 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Rops8g03904 628 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 2 477 - -
Rops8g03904 628 SUPERFAMILY Kelch motif 9 207 IPR015915 GO:0005515
Rops8g03904 628 Pfam Galactose oxidase, central domain 25 72 - -
Rops8g03904 628 Pfam Galactose oxidase, central domain 74 122 - -
Rops8g03904 628 Pfam Galactose oxidase, central domain 126 176 - -
Rops8g03904 628 SUPERFAMILY Kelch motif 162 317 IPR015915 GO:0005515
Rops8g03904 628 MobiDBLite consensus disorder prediction 398 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03904 Rops-Chr8 79998868 80002789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03904 154 301 Acyl Lipid Metabolism Gene Families AT3G05420 28.302 2.83e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03904 K20285 - gmx:100796366 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03904 8 79998868 80002789 Rops8g03904 8 79998868 80002789 ECH
Rops8g03904 8 79998868 80002789 Rops6g01944 6 37276167 37279931 PCT