Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01944 ATGATGGGGTCTTTGGTAGCTGAAACAACAAAGAAGAAAGCAATGTGGTTGTATCCAAAGGTTTTGGGTTTTAATCCTTCTGAAAGATGGGGGCACTCTGCTTGCTTCTCTGGGGGGCTTATGTATGTCTTTGGGGGCTGTTGTGGGGGATTGCATTTTAGTGATGTTCTGTGTTTGGACCTTGACAAAATGGAATGGAGCAAGCTTGCTACCACAGGTGAAAAGCCAGGCCCTAGAGACAGCCACAGTGCTGTTCTTGTAGGACACAAAATGATAGTATTTGGTGGTACAAATGGATTCAAGAAGGTGAATGACACTCATATACTTGATCTTGTCACCAAAGAGTGGTTTCGTCCTAAATGTGAAGGGATTCCTCCTCCTCCACGGGAAAGTCATACAGCCACTCTTGTTGGTGATGAAAGATTAGTGATTTTTGGTGGCAGTGGTGAAGGTGAAGCAAACTATTTAAATGATTTGCATATTCTAGACCTTAGAACCATGAGATGGACTTCTCCCGAGCTCAAAGGTGAATTGCCTATCCCAAGGGACAGTCACACTACTCTTGCAATTGGAAGCAAGCTTATTGTGTATGGTGGAGACTCTGGTGATCAGTACCATGGTGATGTTAATATGCTTGATATGGAAACAATGACTTGGTCAAGGTTGAAAATTCAAGGTTCTTCTTCACCAGGAGTGAGGGCAGGTCATGCGGCAGTGAATATTGGAACCAAGGTCTACATCATTGGAGGGGTTGGTGATAAACGTTATTGCAATGGCATCTGGGTCTTTGATATTTGCACTTGTTCATGGACTCAACTTGATATACATGGTCAACAGCCACAGGGGCGGTTTTCTCATACAGCTGTTGTTGCGGACATGGATATTGCAATATATGGCGGCAGGTGTGGGGAAGATGAACGTCCTTTGAATGAATTGTTAGTATTGCAGCTTGGAGCAGAACATCTAAATGGACGTTACAACATTTCCAGGTGCAAACTTTTTGGAACTTATTGGAATCAAGAAAAGAGGCCCACCCCAGGAGGAGCAGATACCAACTCGAAAACTCCAAGCACGGGGAATAATATGGAAGTCTTGGGAAAATGGGTTTATGAAGTTGCATCAGAAAAAGAACAACCTTATCACTTTGATTCAGGAACTTCACAACAGAAGAGGAGGAGAATTGCTGCTGTAAAGGTTTGGGATGTTGATTCAGAACAAGAAGAACATTCTCTTTCACTGTCCCAGCATTCATCTCCATCTCAATCTGATCAAGAACAGACCCCAGGTCAAAAAGCAAATGCTTCTGTCATGGATTCTCAGCGGTATCGTCGGTTCAAACAGATCCATAAAATTCCAAGTAATTGCCAGCTTGAAAATGTCTCAAGTAATAAGAGAGTTTTGAAGAATATCACACAAAGAACCCCACAAGATCTTCATTTTTTGGATCATCAACCAAAACAAGAACAGTATCTTCATGTTGATGAGGATATTAAAGGAGCTCGACACCAAGCTACAGAGCATAAACCCGTGGGGCGAGGACACACTCAACACCTGATTGGTGCTGAAGTTCGTGGGAAAGTTGATGGAGCCTTTGATTCAGGTTTGCTGATGACTGCAGCTGTGAATGGAAGAATTTTCAGAGGAGTCTTGTTTGCACCAGGAGCAGGAGTTGTCTCCACCAGCATTGAGCCAAATTGTTCTTTATCATGTTTATTTCCCTCCACTCAACCATTCATGAACTCAAATCATGTGGAAAATTTGAAGGATTCCCAGCAAGTTAATACTTGTTCGCGTGCAGACCCCTGCTATGGCTTACGGCAACCTCTACTGGCTCAACCATCTCCAATCATGAGAGGCACTACTGCATCTTTATCCGAAGAGCATAAGGTCAGAAGTGACCTTCAAGGGCTGGTTTTGACCCTTGGAGGGCCAGCAAGTGGCAACCATGCCTGA 1953 0.4368 MMGSLVAETTKKKAMWLYPKVLGFNPSERWGHSACFSGGLMYVFGGCCGGLHFSDVLCLDLDKMEWSKLATTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNDTHILDLVTKEWFRPKCEGIPPPPRESHTATLVGDERLVIFGGSGEGEANYLNDLHILDLRTMRWTSPELKGELPIPRDSHTTLAIGSKLIVYGGDSGDQYHGDVNMLDMETMTWSRLKIQGSSSPGVRAGHAAVNIGTKVYIIGGVGDKRYCNGIWVFDICTCSWTQLDIHGQQPQGRFSHTAVVADMDIAIYGGRCGEDERPLNELLVLQLGAEHLNGRYNISRCKLFGTYWNQEKRPTPGGADTNSKTPSTGNNMEVLGKWVYEVASEKEQPYHFDSGTSQQKRRRIAAVKVWDVDSEQEEHSLSLSQHSSPSQSDQEQTPGQKANASVMDSQRYRRFKQIHKIPSNCQLENVSSNKRVLKNITQRTPQDLHFLDHQPKQEQYLHVDEDIKGARHQATEHKPVGRGHTQHLIGAEVRGKVDGAFDSGLLMTAAVNGRIFRGVLFAPGAGVVSTSIEPNCSLSCLFPSTQPFMNSNHVENLKDSQQVNTCSRADPCYGLRQPLLAQPSPIMRGTTASLSEEHKVRSDLQGLVLTLGGPASGNHA* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01944 650 MobiDBLite consensus disorder prediction 411 437 - -
Rops6g01944 650 SUPERFAMILY Kelch motif 21 222 IPR015915 GO:0005515
Rops6g01944 650 Gene3D - 123 353 IPR015915 GO:0005515
Rops6g01944 650 MobiDBLite consensus disorder prediction 406 437 - -
Rops6g01944 650 Gene3D - 14 122 IPR015915 GO:0005515
Rops6g01944 650 Pfam Galactose oxidase, central domain 88 136 - -
Rops6g01944 650 Pfam Galactose oxidase, central domain 140 190 - -
Rops6g01944 650 Pfam Galactose oxidase, central domain 38 86 - -
Rops6g01944 650 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 15 592 - -
Rops6g01944 650 Pfam Kelch motif 233 273 IPR006652 GO:0005515
Rops6g01944 650 SMART kelc_smart 244 293 IPR006652 GO:0005515
Rops6g01944 650 SMART kelc_smart 40 89 IPR006652 GO:0005515
Rops6g01944 650 SMART kelc_smart 193 243 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01944 Rops-Chr6 37276167 37279931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01944 16 416 Acyl Lipid Metabolism Gene Families AT3G05420 31.280 4.86e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01944 K20285 - gmx:100801275 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01944 6 37276167 37279931 Rops6g01944 6 37276167 37279931 ECH
Rops8g03904 8 79998868 80002789 Rops6g01944 6 37276167 37279931 PCT