Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03875 ATGTCCAAGGAAGCTTCTCTGTGCCTCTTGTTCCTCTCTTTTCTCATTATCTGCTGTTCTGGTACTCCGGTGGGTCTTTCCAATCGTGGGACCGGAGACACTGCATCTTCAGCATCCGCTGGAGCCACATTCATTCAGGAAATCACGATCTCCCAATCTCAGATTCGGTTTTTGGCAACAGATCATCAGATTTTGAGCACTCTGACCAACATGTCAGTTGATTTCTTCTTAGATAAAAGCCTGGTTGAAAATTTTATATCTGGAGTTTCATGGGTAAAATCTCATCTTGTAAGCATTCTTCCACAAGTAGACATCAGAAGCATCATTGTTAGTTGTGGCAGTGAGTTCGTAGGCCAAAAGGAGATGCCTTTACTTGTATCCACTCTGAAATCAATTCATTCAGTTCTCAGCAAGGTTCAAATCAACAGGGAAGTAAAAGTCTCAGTAGCATTTCCACTTTCATTCTTAGAGAATCTGGATCCATCATATGAAAATGATCTCCGGAGGATTCTTTGGTTCATAAAGAAAATAGATTCCTTTATCATGATAGAAGATAATATTGATGGGGAATTAAGCATGGGGGATCACTTTGTTCAGTCTGTTATCAAACGAGCCACCTTTGCTGCTTCTATTCTTCCATGCAAAGATGTTCCTGTGGTTTTGACAATCAAGAGCCCAGTTATTCCCAGTTCAATGGAATTAGCTCAATTTAGTGAGGCAGTATCCAAATATTTTCAAGCAAAATCTCAGATTACAAAAAGAATAGTTGCATTTTATGTAGAAGTACCCACAACCAAAGATTTTGTGCAGAAAGAGCTCAAAAGAGAAGAGGAAGAGATATTTCCTTTGTCAAGCAGAGAAAAGCTAAGCAAATTTAACATCAGAAGAACTCTAGAAGACACCAACAACTCACCTGCCCCAGTTTTTCCCACAAATCCAACATCTGCCACACCAGTCATCACACCTCCAGACACACCAACCATCATCACAGTTCCTTCCACCAATCCTGTCACAGTTTCCCCTACCAATCCAGCTGCAACGCCTGTGACAGTTCCTTCTACCACACCTGTTCCCCCCTCAGCCCCTACAAATCCAGCCAATACACCAGTACCTGTCACCAATCCAGTTACATCTCCAATTACAGTTCCAGGGGCACAACCAGTTACCAACCCTGTGACTTCCTCTTATCCACCCCCATCAGGAAGTGTTCCTGTGATAAACCCACAGTCACCACCTGGAAACACAAATGCTTCAGCAAGTCCAGGGCAGAGCTGGTGTGTGGCAAAGAATGGAGTTCCAGAAACTGCTCTTCAATCAGCACTGGATTATGCTTGTGGAATGGCAAGTGCTGATTGTTCACAAATACAGCAAGGTGGGAGTTGTTACAATCCGAATTCCATACAAAACCATGCTTCTTTTGCCTTCAACAGCTACTACCAAAAGAATCCTGCGCCAACAAGCTGTGACTTTGGAGGGACTGCCACCATTGTTAGCACCAATCCAAGCACGGGTACTTGCATTTTCCCATCATCTTCAGGAGCAGGTGCAGCCGGCTCTGGTGCCCCATCTTCAGCTGTTGGTTCCCAAAGCTCTCCTGATTTCAATACCTCGCTTTCAGCTGGTCCGAGACCTTTTCTTAGCTGCATGATTCTGGTGATATCATTGGTCAGTGGAAGACTCATTATGAGCCTATAG 1695 0.4383 MSKEASLCLLFLSFLIICCSGTPVGLSNRGTGDTASSASAGATFIQEITISQSQIRFLATDHQILSTLTNMSVDFFLDKSLVENFISGVSWVKSHLVSILPQVDIRSIIVSCGSEFVGQKEMPLLVSTLKSIHSVLSKVQINREVKVSVAFPLSFLENLDPSYENDLRRILWFIKKIDSFIMIEDNIDGELSMGDHFVQSVIKRATFAASILPCKDVPVVLTIKSPVIPSSMELAQFSEAVSKYFQAKSQITKRIVAFYVEVPTTKDFVQKELKREEEEIFPLSSREKLSKFNIRRTLEDTNNSPAPVFPTNPTSATPVITPPDTPTIITVPSTNPVTVSPTNPAATPVTVPSTTPVPPSAPTNPANTPVPVTNPVTSPITVPGAQPVTNPVTSSYPPPSGSVPVINPQSPPGNTNASASPGQSWCVAKNGVPETALQSALDYACGMASADCSQIQQGGSCYNPNSIQNHASFAFNSYYQKNPAPTSCDFGGTATIVSTNPSTGTCIFPSSSGAGAAGSGAPSSAVGSQSSPDFNTSLSAGPRPFLSCMILVISLVSGRLIMSL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03875 564 MobiDBLite consensus disorder prediction 301 315 - -
Rops8g03875 564 Gene3D Glycosidases 24 186 - -
Rops8g03875 564 PANTHER BETA-1,3 GLUCANASE 420 519 IPR044788 -
Rops8g03875 564 FunFam Glucan endo-1,3-beta-glucosidase 4 419 512 - -
Rops8g03875 564 MobiDBLite consensus disorder prediction 301 321 - -
Rops8g03875 564 MobiDBLite consensus disorder prediction 351 365 - -
Rops8g03875 564 Gene3D - 419 512 - -
Rops8g03875 564 MobiDBLite consensus disorder prediction 333 365 - -
Rops8g03875 564 SMART X8_cls 424 508 IPR012946 -
Rops8g03875 564 MobiDBLite consensus disorder prediction 333 350 - -
Rops8g03875 564 Pfam X8 domain 425 495 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03875 Rops-Chr8 79667663 79670459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03875 370 511 Glycoside Hydrolase AT2G05790 41.958 8.19e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03875 - - ccaj:109798054 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03875 8 79667663 79670459 Rops8g03875 8 79667663 79670459 ECH
Rops8g03875 8 79667663 79670459 Rops6g01975 6 37567192 37570150 PCT