Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01975 ATGGCCAAGGAAGCTTCTTTGTGCCTCTTGTTTTTCTCTATTCTCTTTATCTCCTGTTCTGGTGCTTTGGTGGGATTTTCCTATCGCGAGAGAGGAGACACTTCAACATCTGATGGAACCATATCATTCCTGCAACAAAGCAAGGTTTCCCCATCTCAGCTTCGAATTTTTGTCACAGATCATAGGATTTTGAGCACTCTAACCAACTCCAACGTGTCAGTTGATCTCTACTTGAACAAAAGCCAAGTTGAAAATTTCATTACTTCAAAACCTTCTGCAATTTCAGGGCTAAAAGCTCACCTTGTAAACTTTCTTCCACATTTAGACATCAAAAGCATCATTGCTAGCTGTGGCAGTGAGTGCTTAGCCCAAAATGAGATGCCTTTGCTTCTATATGTGTTGAAATCAATTCATTCAATTCTCAGTGAGCTTCACTTGGGCAGGGAAGTAAAAGTCTCAGTAGCATTTCCACTGCCATTGTTGTTACAAAAGTTGAATGCATCACATGAAAATGATATTCGTAGGATTCTTTCATTTATAAAGGAAATAGAATCGTTTGTCATGATAGAAGATAGCATTGATGGAGAATTAAGCATGGGGGATCACTTTGTTCAGTCTATTATTGAAAAAGCTGCTCTTGCTGCTTCTATTCTTCCTTGCAAAGATGTTCCACTGGTTCTGACAATCAAGAGTCCAGTTATCCCCAGTTCAATGGAAGTGGCTCAATTTAGTGAGAGAGCATCAAAATATCTAGAAGCAAGAACTCCGATCACAAAAAGAATAGCAGCATTATATGCAGAAGTGCATAAAACAGAAGATTTTGCACAAAAAGAGCTCAAAAGGGAAGAGGAAGAATTGTTTCCTTTGTCCCGCAGAGAGATCTTAAGCAAATTCCACATAAGAAGAACTCTAGATGACACAAACAACCCAGCTAACACAGTTTTCCCCACAAATCCAACATCATCTACACCAGTCATCATACCCCCAGATACACCAACCATCATCACAGTTCCTTCCACAAACCCTGTAACAATTTCCCCTACCAATCCAGCTGCAATGCCTGCTGTAACAGTTCCTTCTACCACACCTGTGCCCTTAACTCCCACAAATCCAACCAATCCAGCTACAACTCCCACAAATCCAGTCAATCCAGCTACAACTCCCACAACAGTTCCAGGAGCACAACCAGTAACCAACCCTGTGACATCTTATCCACCTCCATCAGGATATGTTCCTGTCATGAACCCCCAGCCACCTCCTGCAAACACAAATGCTCCTGCCACTCAAGGACAGAGTTGGTGTGTGGCAAAGACAGGAGCTCCAGAAGCTTCTCTTCAAGCAGCATTGGACTATGCTTGTGGAAAGGGTGCAGATTGTTCTCAAATACAGCAGGGTGGGAGTTGTTACAGTCCAATTACTTTGCAAAATCATGCTTCTTATGCCTTCAACAGCTACTATCAAAAGAATCCAGCCCCAACAAGTTGTGACTTTGGAGGAACTGCCACCTTAGTCAACACAAACCCAAGCTCGGGTTCTTGCATTTTCCCATCATCATCATCAACGCCAATGCCATCATCCCCAACAACACCTACTCAATCAATTCCACCACCAAGTCCAACAACACCTTCACCATCAATTCCAACATCACCTTCACCATCAATTCCAACACCACCTACACCATCAATCCCAACACCACCTACACCATCAATCCCAACACCACCTACACCATCTTCAGGAACAGGCACTTCTGGCTATGGTACCCCACCTTCAGTATTAAATTCAAGCAACCCAGCAACAGGTTTAATGCCAGGTTTTGGGTCCGAAAGCCCTCCTGTTGTAAATACCACGCCAGCCTCACATTCTGTAGTTCTGAGACCTTTTGCTGGCTGCATAGTTCTGATGATATCATTTGTCACTGCAAGACTGAGTATACACTCATAG 1941 0.4312 MAKEASLCLLFFSILFISCSGALVGFSYRERGDTSTSDGTISFLQQSKVSPSQLRIFVTDHRILSTLTNSNVSVDLYLNKSQVENFITSKPSAISGLKAHLVNFLPHLDIKSIIASCGSECLAQNEMPLLLYVLKSIHSILSELHLGREVKVSVAFPLPLLLQKLNASHENDIRRILSFIKEIESFVMIEDSIDGELSMGDHFVQSIIEKAALAASILPCKDVPLVLTIKSPVIPSSMEVAQFSERASKYLEARTPITKRIAALYAEVHKTEDFAQKELKREEEELFPLSRREILSKFHIRRTLDDTNNPANTVFPTNPTSSTPVIIPPDTPTIITVPSTNPVTISPTNPAAMPAVTVPSTTPVPLTPTNPTNPATTPTNPVNPATTPTTVPGAQPVTNPVTSYPPPSGYVPVMNPQPPPANTNAPATQGQSWCVAKTGAPEASLQAALDYACGKGADCSQIQQGGSCYSPITLQNHASYAFNSYYQKNPAPTSCDFGGTATLVNTNPSSGSCIFPSSSSTPMPSSPTTPTQSIPPPSPTTPSPSIPTSPSPSIPTPPTPSIPTPPTPSIPTPPTPSSGTGTSGYGTPPSVLNSSNPATGLMPGFGSESPPVVNTTPASHSVVLRPFAGCIVLMISFVTARLSIHS* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01975 646 MobiDBLite consensus disorder prediction 576 602 - -
Rops6g01975 646 FunFam Glucan endo-1,3-beta-glucosidase 4 427 519 - -
Rops6g01975 646 PANTHER BETA-1,3 GLUCANASE 390 527 IPR044788 -
Rops6g01975 646 FunFam Glucan endo-1,3-beta-glucosidase 1 24 191 - -
Rops6g01975 646 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Rops6g01975 646 MobiDBLite consensus disorder prediction 528 575 - -
Rops6g01975 646 MobiDBLite consensus disorder prediction 513 617 - -
Rops6g01975 646 Coils Coil 265 285 - -
Rops6g01975 646 MobiDBLite consensus disorder prediction 513 527 - -
Rops6g01975 646 Pfam X8 domain 433 502 IPR012946 -
Rops6g01975 646 SMART X8_cls 432 515 IPR012946 -
Rops6g01975 646 Gene3D Glycosidases 24 191 - -
Rops6g01975 646 Gene3D - 427 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01975 Rops-Chr6 37567192 37570150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01975 396 518 Glycoside Hydrolase AT2G05790 45.736 1.82e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01975 - - gmx:100794910 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01975 6 37567192 37570150 Rops6g01975 6 37567192 37570150 ECH
Rops8g03875 8 79667663 79670459 Rops6g01975 6 37567192 37570150 PCT