Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03870 ATGGGGCAAAAGCATTTCGTGGTGGCTTTCTGTTTATGGGCCTTAACATGTTCCCTGCTTCCTTCTTTCTCATTTGGAATTCTGAGAATTGGTTTGAAGAAGAGACCTCTAGATCTTCAAAGTATTAAGGCTGCTAAAAAGGCAAGAGAAGAACTGAGATCAGGAAGACCATTGCTGGGTGCACATGATCAGTATATCAGCAAGTCCAGTGGTGAAGATATAGTGCCTTTGAAGAATTATTTGGATGCTCAATATTTTGGTGAGATTGGAATTGGCACACCCCCACAGCGCTTTACTGTTGTATTTGATACTGGTAGTTCCAACCTTTGGGTTCCATCATCGAAGTGTTACTTTTCTCTTGCCTGCTATACCCATAATTGGTACAAGGCAAAGAAATCCAAAACATATACCAAAAATGGAACATCATGTAAAATAACCTATGGATCTGGATCAATATCTGGTTTCTTCAGTCAAGATAATGTTAAAGTCGGCAACACTGTTGTCAAGGATCAGGATTTCATCGAGGCCACACGAGAAGGAAGTCTTTCCTTTCTGTCAGCAAAGTTTGATGGAATAATTGGGCTTGGATTTCAGGAGATCTCAGTTGAAAATTCTGTGCCAGTGTGGTACAATATGATGGAGCAAGGTCTTATAAGTGAGAAGGTGTTCTCTTTTTGGCTCAATGGGGATCCTAAGGCTAGAAAGGGTGGTGAACTAGTTTTTGGTGGTGTTGACCCAAAGCATTTCAAAGGAAAACACACTTACGTTCCAGTTACTAGAAAGGGTTACTGGCAGATTGAAATGGGTGATTTTTACATTGGAGGTCTTTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGCCCAACTCCTGTTGTGGCTGAAATCAACCATGCTATTGGAGCTGAAGGAATTCTTAGTGTAGAGTGTAAGGAAGTTGTTTCTCAATATGGAGAGTTGATATGGGATCTCTTAGTGTCAGGCGTACAACCTGGCGACGTATGTTCACAAGTTGGTTTGTGTTCTGCCAAAAGGCATCAATCTATAAGTGCTGGGATTGAGATGGTGACTGAAAAGGAACAAGAAGAGTTGTCAGCTAGAGATACCCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAAAATCAACTTAAACAGAAGTCGACGAAGGATAGAGTATTCAACTACGTGAATCAACTGTGTGAGAATCTGCCAAGTCCAGCTGGAGAGTCGGTGATAAGCTGCGATAATCTTTCTCGGATGCCAAACATTACATTTACTATCGGAGATAAGCCTTACGTCCTCACTCCAGAGCAGTATATTTTGAGAACTGGAGAAGGAATTACAGAAGTCTGCCTTAGTGGGTTTATTGCTTTGGATGTTCCTGCTCCACGTGGTCCACTCTGGATTCTTGGTGATATTTTCATGAGGGTATATCACACAGTCTTTGACTATGGAAATCTCCAACTTGGTTTTGCTGAAGCTGTCTGA 1527 0.4191 MGQKHFVVAFCLWALTCSLLPSFSFGILRIGLKKRPLDLQSIKAAKKAREELRSGRPLLGAHDQYISKSSGEDIVPLKNYLDAQYFGEIGIGTPPQRFTVVFDTGSSNLWVPSSKCYFSLACYTHNWYKAKKSKTYTKNGTSCKITYGSGSISGFFSQDNVKVGNTVVKDQDFIEATREGSLSFLSAKFDGIIGLGFQEISVENSVPVWYNMMEQGLISEKVFSFWLNGDPKARKGGELVFGGVDPKHFKGKHTYVPVTRKGYWQIEMGDFYIGGLSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGILSVECKEVVSQYGELIWDLLVSGVQPGDVCSQVGLCSAKRHQSISAGIEMVTEKEQEELSARDTPLCSSCQMLVLWIQNQLKQKSTKDRVFNYVNQLCENLPSPAGESVISCDNLSRMPNITFTIGDKPYVLTPEQYILRTGEGITEVCLSGFIALDVPAPRGPLWILGDIFMRVYHTVFDYGNLQLGFAEAV* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03870 508 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
Rops8g03870 508 ProSiteProfiles Peptidase family A1 domain profile. 85 505 IPR033121 -
Rops8g03870 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Rops8g03870 508 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Rops8g03870 508 Pfam Saposin-like type B, region 1 380 417 IPR007856 GO:0006629
Rops8g03870 508 Pfam Eukaryotic aspartyl protease 84 507 IPR033121 -
Rops8g03870 508 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
Rops8g03870 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Rops8g03870 508 Gene3D Acid Proteases 28 243 IPR021109 -
Rops8g03870 508 CDD phytepsin 75 506 IPR033869 GO:0004190
Rops8g03870 508 SUPERFAMILY Saposin 317 417 IPR011001 -
Rops8g03870 508 FunFam Lysosomal aspartic protease 71 313 - -
Rops8g03870 508 SUPERFAMILY Acid proteases 15 507 IPR021109 -
Rops8g03870 508 FunFam Lysosomal aspartic protease 370 507 - -
Rops8g03870 508 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Rops8g03870 508 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Rops8g03870 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190|GO:0006508
Rops8g03870 508 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Rops8g03870 508 Gene3D - 315 417 - -
Rops8g03870 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 18 506 IPR001461 GO:0004190|GO:0006508
Rops8g03870 508 SMART sapb_4 279 351 IPR008139 -
Rops8g03870 508 Gene3D Acid Proteases 244 507 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03870 Rops-Chr8 79611597 79616138 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03870 K08245 - gmx:548009 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03870 8 79611597 79616138 Rops8g03870 8 79611597 79616138 ECH
Rops8g03870 8 79611597 79616138 Rops6g01981 6 37620729 37626955 PCT