Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01981 ATGAAAGAGATGATCAACATGTCTGATAAGCTAAAGATTTTCCCTATGGGGCGCAAGTATTTGTGGGTGGCTTTCTGTTTGTGGGCTTTAACATGCTCGCTTCTTCCTTCTTTCTCCTGTGGACTTATGAGAATTGATTTGAAGAAGAGAACTTTAGATCTTGATAGTATTAGAGCTGCTAGAAGGGTAAGAGAAGAGCTAAGATTAGGTAGGCCTGTGCTGGGTGCATATGATCAATATATTGGTAAGTCAACAGATGATGCCTTAGTACCTTTGAAGAATTTTTTGGATGCACAATACTATGGAGAGATTGGAATTGGCACACCCCCACAGAAATTTGATGTGATATTTGATACTGGTAGTTCCAACCTCTGGGTTCCATCATCAAAGTGCTATTTTTCTCTTGCCTGCTACACCCATCGTTGGTACAAGTCAAAGAAATCCAAAACACATACCAAAAATGGAACATCATGTAAAATAAGATATGGATCTGGATCTATATCTGGTTTTTTCAGTCAAGATAATGTTAAAGTTGGGAGTGTTATTGTCAAGAATCAGGATTTCATTGAGGCCACCCGAGAAGGAAGTATTTCCTTTGTGTTAGCAAAGTTTGATGGATTACTTGGGCTTGGGTTTCAGGAGATCTCTGTTGAAAATGCTGTGCCAGTATGGTACAATATGGTGGAGCAAAATCTTCTAAGTGAGCCGGTGTTCTCTTTTTGGCTCAATGGGGATCCAAAAGCGAAAAAGGGCGGTGAGCTACTTTTTGGGGGTGTTGATCCGAAGCACTTTAAAGGGAATCATACTTATGTTCCAGTTACTAACAAAGGTTATTGGCAGATTGAAATGGGAGATTTTTTCATTGGAGGTCTCTCAACAGGTGTTTGTGAAGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTACTGTTGTGACTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAATTATTGTTGAATATGGAGAGTTGATTTGGGATCTCTTGATATCTGGGGTGCGACCTAATGATGTATGTTCACAAGTTGGTTTATGTTTCGCCAAGAGGGATCAATCTAAGAGTGTTGGGATTGAGATGGTGACTGAAAAGGAACAAAGTGAGTTGTCAGCTAAAGATACGGCTTTGTGCACTCCCTGTCAGATGCTTGTGGTTTGGATCCAGAATCAACTAAAACAAAAGTCAACCAAGGATAGAGTATTCAACTATGTAAATCAGCTGTGCGAGAGCTTGCCAAGTCCAAATGGTGAGTCGGTCGTAAACTGCAATAGCATTTCTCAATTGCCAAACATCACGTTTACTATTGGAGACAAACCTTTCACCCTCACTCCAGAGCAGTATATTCTGAAAACTGGAGAAGGCATTGCAGAAGTCTGCCTTAGTGGGTTTATTGCTTTTGACATTCCTCCTCCACGGGGTCCTCTCTGGATTCTTGGCGATGTTTTCATGAGGGTATATCACACCATCTTCGACTATGGAAATCTCAGACTTGGTTTTGCTAAAGCTGCCTGA 1572 0.4122 MKEMINMSDKLKIFPMGRKYLWVAFCLWALTCSLLPSFSCGLMRIDLKKRTLDLDSIRAARRVREELRLGRPVLGAYDQYIGKSTDDALVPLKNFLDAQYYGEIGIGTPPQKFDVIFDTGSSNLWVPSSKCYFSLACYTHRWYKSKKSKTHTKNGTSCKIRYGSGSISGFFSQDNVKVGSVIVKNQDFIEATREGSISFVLAKFDGLLGLGFQEISVENAVPVWYNMVEQNLLSEPVFSFWLNGDPKAKKGGELLFGGVDPKHFKGNHTYVPVTNKGYWQIEMGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEIIVEYGELIWDLLISGVRPNDVCSQVGLCFAKRDQSKSVGIEMVTEKEQSELSAKDTALCTPCQMLVVWIQNQLKQKSTKDRVFNYVNQLCESLPSPNGESVVNCNSISQLPNITFTIGDKPFTLTPEQYILKTGEGIAEVCLSGFIAFDIPPPRGPLWILGDVFMRVYHTIFDYGNLRLGFAKAA* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01981 523 CDD phytepsin 90 521 IPR033869 GO:0004190
Rops6g01981 523 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 115 126 IPR001969 GO:0004190|GO:0006508
Rops6g01981 523 Pfam Saposin-like type B, region 2 334 366 IPR008138 -
Rops6g01981 523 Pfam Saposin-like type B, region 1 396 432 IPR007856 GO:0006629
Rops6g01981 523 Gene3D Acid Proteases 43 258 IPR021109 -
Rops6g01981 523 Gene3D Acid Proteases 259 523 IPR021109 -
Rops6g01981 523 Gene3D - 330 432 - -
Rops6g01981 523 PRINTS Pepsin (A1) aspartic protease family signature 252 265 IPR001461 GO:0004190|GO:0006508
Rops6g01981 523 PRINTS Pepsin (A1) aspartic protease family signature 106 126 IPR001461 GO:0004190|GO:0006508
Rops6g01981 523 PRINTS Pepsin (A1) aspartic protease family signature 496 511 IPR001461 GO:0004190|GO:0006508
Rops6g01981 523 PRINTS Pepsin (A1) aspartic protease family signature 302 313 IPR001461 GO:0004190|GO:0006508
Rops6g01981 523 ProSiteProfiles Peptidase family A1 domain profile. 100 520 IPR033121 -
Rops6g01981 523 FunFam Lysosomal aspartic protease 372 522 - -
Rops6g01981 523 ProSiteProfiles Saposin B type domain profile. 393 434 IPR008139 -
Rops6g01981 523 Pfam Eukaryotic aspartyl protease 99 522 IPR033121 -
Rops6g01981 523 FunFam Lysosomal aspartic protease 86 328 - -
Rops6g01981 523 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 77 521 IPR001461 GO:0004190|GO:0006508
Rops6g01981 523 SUPERFAMILY Acid proteases 32 522 IPR021109 -
Rops6g01981 523 SUPERFAMILY Saposin 331 432 IPR011001 -
Rops6g01981 523 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 302 313 IPR001969 GO:0004190|GO:0006508
Rops6g01981 523 ProSiteProfiles Saposin B type domain profile. 330 370 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01981 Rops-Chr6 37620729 37626955 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01981 K08245 - gmx:547993 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01981 6 37620729 37626955 Rops6g01981 6 37620729 37626955 ECH
Rops8g03870 8 79611597 79616138 Rops6g01981 6 37620729 37626955 PCT