Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03857 ATGATGAAGCTCACAGTGTTGCTGCTTCTGGTGCTAACCACCGCCACTGCATCAGACCCTGATCCCCTTCAAGACCTCTGTGTCGCAGACCTTGCCTCAGCGGTTATAGTCAATGGATTCACCTGCAAAGACACTTCCGAGGTAAATGCATCTGATTTCTTCACAGACATACTAGCTAAACCAGGTTCCACAAACAACACCTTTGGCTCCCTGGTAACTGGAGGCTTTGTTCAGAAAATCCCAGGACTCAATACCCTTGGTGTGTCAATGGCACGCATCGACTATGCCCCAGGTGGCCTCAACCCACCTCACACCCACCCACGTGCCACAGAGATTGTGTTTGTGCTTGAAGGACAATTGGATGTGGGGTTCATAACCACATCCAATGTGCTCATATCAAAGACTATAAACAAAGGTGAGATATTTGTGTTCCCAAAAGGCTTAGTTCACTACCAAAAGAACAATGACATGGAGCCAGCTTCTGTCATTGTAGCCTTCAATAGCCAATTCCCTGGTACACAGTCCATTCCTCTCACTTTGTTTGCAGCCATGCCACCTGTTCCAAACAATGTGTTGACAAAGGCATTCCAGGTGGGAACCAAGGAAGTTGAGAAAATCAAGTCTAGGCTTGCACCCAAAATGTAG 645 0.4729 MMKLTVLLLLVLTTATASDPDPLQDLCVADLASAVIVNGFTCKDTSEVNASDFFTDILAKPGSTNNTFGSLVTGGFVQKIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEIVFVLEGQLDVGFITTSNVLISKTINKGEIFVFPKGLVHYQKNNDMEPASVIVAFNSQFPGTQSIPLTLFAAMPPVPNNVLTKAFQVGTKEVEKIKSRLAPKM* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03857 214 SUPERFAMILY RmlC-like cupins 19 209 IPR011051 -
Rops8g03857 214 ProSitePatterns Germin family signature. 99 112 IPR019780 GO:0030145
Rops8g03857 214 PRINTS Germin signature 167 182 IPR001929 GO:0030145
Rops8g03857 214 PRINTS Germin signature 134 154 IPR001929 GO:0030145
Rops8g03857 214 PRINTS Germin signature 104 124 IPR001929 GO:0030145
Rops8g03857 214 Gene3D Jelly Rolls 18 212 IPR014710 -
Rops8g03857 214 SMART Cupin_1_3 55 204 IPR006045 -
Rops8g03857 214 Pfam Cupin 58 203 IPR006045 -
Rops8g03857 214 CDD cupin_OxOx 19 210 IPR001929 GO:0030145
Rops8g03857 214 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 208 - -
Rops8g03857 214 FunFam germin-like protein subfamily 2 member 1 18 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03857 Rops-Chr8 79397315 79398584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03857 1 213 Miscellaneous Gene Families AT3G05930 52.336 1.95e-79 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03857 - - gmx:100791628 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03857 8 79397315 79398584 Rops6g01993 6 37774247 37775822 PCT