Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01993 ATGGCTACCATGAAGCTCGCAGACTCCCTGCTTCCCCTGACTCTGGCTCTGCTCTTAGCCACCGCTATCTCTTCAGATCCTGACCCTCTTCAAGACCTCTGTGTAGCCGACCTTAACTCGGGTGTCAAAGTGAATGGATTCACATGCAAAGACGAATCCAAGGTAAACGCTTCTGATTTCTTCTCCAACATACTAGCCAAGCCAGGAGCCACCAACAACACTTATGGTTCTGTGGTGACTGGAGCCAATGTTCAGAAAATCCCAGGACTCAACACCCTTGGTGTCTCTCTTTCAAGGATTGACTATGCCCCAGGTGGTCTTAACCCACCTCACACCCACCCACGTGCCACTGAGATGGTGTTTGTGCTTGAAGGGACACTAGATGTGGGGTTCATAACCACATCCAATGTGCTCATATCAAAGACCATTAAAAAGGGTGAGATATTTGTGTTCCCAAAAGGCTTGGTTCACTTCCAAAAGAACAATGGCAAGGTACCTGCTGCTGTGATTTCAGCCTTCAATAGCCAACTTCCTGGCACACAGTCCATTGCTACCACCTTGTTTGCTGCCACTCCTCCTGTTCCAGACCATGTGTTAACCAAGACATTCCAAGTGGGTACCAAGGAGGTTGAGAAAATCAAGTCCAGGCTTGCACCCAAGAAGTAA 666 0.485 MATMKLADSLLPLTLALLLATAISSDPDPLQDLCVADLNSGVKVNGFTCKDESKVNASDFFSNILAKPGATNNTYGSVVTGANVQKIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEMVFVLEGTLDVGFITTSNVLISKTIKKGEIFVFPKGLVHFQKNNGKVPAAVISAFNSQLPGTQSIATTLFAATPPVPDHVLTKTFQVGTKEVEKIKSRLAPKK* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01993 221 Pfam Cupin 65 210 IPR006045 -
Rops6g01993 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 20 215 - -
Rops6g01993 221 Gene3D Jelly Rolls 25 219 IPR014710 -
Rops6g01993 221 CDD cupin_OxOx 26 217 IPR001929 GO:0030145
Rops6g01993 221 SUPERFAMILY RmlC-like cupins 26 216 IPR011051 -
Rops6g01993 221 ProSitePatterns Germin family signature. 106 119 IPR019780 GO:0030145
Rops6g01993 221 PRINTS Germin signature 174 189 IPR001929 GO:0030145
Rops6g01993 221 PRINTS Germin signature 141 161 IPR001929 GO:0030145
Rops6g01993 221 PRINTS Germin signature 111 131 IPR001929 GO:0030145
Rops6g01993 221 SMART Cupin_1_3 62 211 IPR006045 -
Rops6g01993 221 FunFam germin-like protein subfamily 2 member 1 25 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01993 Rops-Chr6 37774247 37775822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01993 6 221 Miscellaneous Gene Families AT3G05930 55.708 1.57e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01993 - - gmx:100791828 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03857 8 79397315 79398584 Rops6g01993 6 37774247 37775822 PCT