Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03832 ATGACATTCTCATTCTCCTCTATTGGTCCCGTCCTCTCCAGCTTATTCTTTTGCTTCATTGCTCTCTCCAACTCTGCATCTTTGGGAGCTGAAGCATGGGTCTCACCCACTATACCCCCCATCTCTTCTCTCATCAGCAGAAAGCTTTTTAATACCCTTTTCCTACACAAAGATGATAATGCATGTCCTGCCAAAGACTTCTACACCTACAAGTCCTTCATTCATGCATCCAAATACTTCCCTGAATTTGGTACCACTGGTTGTTTAGCCACACGCAAGCGTGAGATTGCTGCATTTCTTGCTCAAATTTCCCATGAAACCACAGGTGGGTGGGCCACTGCTCCTGATGGCCCATATGCTTGGGGCTTGTGCTTCAAGGAAGAAATTAGTCCTCAGAGTAACTACTGTGATTCTACTAACAAAAACTGGCCTTGTTTCCCTGGCAAAAGTTACAAGGGGAGAGGACCCATTCAACTTTCTTGGAACTTCAACTATGGACCAGCAGGGAAGGCCTTGGGATTTGATGGGTTGAGGAACCCAGAGATTGTGTCGAATAATTCTGTGATTGCATTCAAAACTGCTCTGTGGTTTTGGATGACAGAGAGAAAGCCAGTTCCTTCTTGTCACAATGTGATGGTTGGAAATTATGTGCCAACAAAAGCTGACATAGCAGCTAATAGAACAGCTGGTTATGGCTTGGTGACTAACATAATCAATGGTGGGTTGGAATGTGGAATTCCTGGCGATGCTAGAGTGAATGATCGGGTCGGATTTTTTGAAAGATATGCCAAACTGTTCGACGTGGATACTGGACCTAACTTGGATTGTGCATATCAGAAACACTTCTAA 849 0.4441 MTFSFSSIGPVLSSLFFCFIALSNSASLGAEAWVSPTIPPISSLISRKLFNTLFLHKDDNACPAKDFYTYKSFIHASKYFPEFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEISPQSNYCDSTNKNWPCFPGKSYKGRGPIQLSWNFNYGPAGKALGFDGLRNPEIVSNNSVIAFKTALWFWMTERKPVPSCHNVMVGNYVPTKADIAANRTAGYGLVTNIINGGLECGIPGDARVNDRVGFFERYAKLFDVDTGPNLDCAYQKHF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03832 282 ProSitePatterns Chitinases family 19 signature 1. 62 84 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops8g03832 282 SUPERFAMILY Lysozyme-like 41 282 IPR023346 -
Rops8g03832 282 PIRSF Endochitinase 17 282 IPR016283 GO:0004568|GO:0005975
Rops8g03832 282 ProSitePatterns Chitinases family 19 signature 2. 189 199 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops8g03832 282 Gene3D Endochitinase, domain 2 127 185 - -
Rops8g03832 282 CDD chitinase_GH19 45 276 - -
Rops8g03832 282 Pfam Chitinase class I 44 276 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops8g03832 282 Gene3D - 48 282 - -
Rops8g03832 282 FunFam Endochitinase (Chitinase) 127 185 - -
Rops8g03832 282 PANTHER CHITINASE-RELATED 40 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03832 Rops-Chr8 79047598 79048711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03832 40 282 Glycoside Hydrolase AT4G01700 75.720 3.43e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03832 - - gmx:100784196 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03832 8 79047598 79048711 Rops6g02020 6 38096897 38098208 PCT