Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02020 ATGGCATTCTCATTCTCCCCTATTGGTATCTCTCTCTCTGGCTTCTTTTTTTGCTATATTATCCTGCTTTACTCCTCATCTTTGGGAGCTGAAGCACGTGGCTCACCCATTACACCCATCTCTTCTCTCATTAGCAAAAAGCTTTTTGATTCCATTTTCCTACACAAAGATGATAGTGCATGCCCTGCCAAAAACTTCTACACCTATGAGTCCTTCATTGTGGCATCCAAATGCTTCTCTACATTTGGTACTACAGGTAGTTTAATCACGCGCAAGCGTGAGGTTGCTGCCTTTCTTGCCCAAATTTCACATGAAACCACAGGTGGGTGGGCTACTGCACCTGATGGACCTTATGCTTGGGGATTGTGTTTCAAGGAAGAAGTTAATCCTCAAAGTAACTACTGTGATTCTACCAACAAGCAATGGCCTTGTTATCCAGGAAAAAGTTACCAAGGCAGAGGACCAATTCAACTTTCTTGGAACTACAACTATGGGCCAGCTGGGAAGGCCTTGGGATTTGATGGATTGAGAAACCCTGATATTGTGTCAAACAATTCAATGATTGCCTTTAAAACAGCTATGTGGTTTTGGATGACAGAGCAAAAGCCGAAACCTTCTTGCCACAATGTGATGATTGGAAAATATGTGCCAACAGAAGCTGACATAGCAGCTAATCGAACTGCAGGGTATGGCCTGGTGACTAACATAATCAATGGTGGACTTGAATGTGGAATTCCTGATGATTCAAGGGTGAATGATCGGATTGGATACTTTAAAAGATATGCAAAATTGTTTAACGTGGATACAGGACCTAACTTGGATTGTACGAATCAGAAATCATTTTAA 846 0.4184 MAFSFSPIGISLSGFFFCYIILLYSSSLGAEARGSPITPISSLISKKLFDSIFLHKDDSACPAKNFYTYESFIVASKCFSTFGTTGSLITRKREVAAFLAQISHETTGGWATAPDGPYAWGLCFKEEVNPQSNYCDSTNKQWPCYPGKSYQGRGPIQLSWNYNYGPAGKALGFDGLRNPDIVSNNSMIAFKTAMWFWMTEQKPKPSCHNVMIGKYVPTEADIAANRTAGYGLVTNIINGGLECGIPDDSRVNDRIGYFKRYAKLFNVDTGPNLDCTNQKSF* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02020 281 CDD chitinase_GH19 44 275 - -
Rops6g02020 281 ProSitePatterns Chitinases family 19 signature 2. 188 198 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops6g02020 281 FunFam Endochitinase (Chitinase) 126 184 - -
Rops6g02020 281 SUPERFAMILY Lysozyme-like 40 281 IPR023346 -
Rops6g02020 281 Pfam Chitinase class I 43 275 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops6g02020 281 ProSitePatterns Chitinases family 19 signature 1. 61 83 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops6g02020 281 PIRSF Endochitinase 15 281 IPR016283 GO:0004568|GO:0005975
Rops6g02020 281 PANTHER CHITINASE-RELATED 37 279 - -
Rops6g02020 281 Gene3D Endochitinase, domain 2 126 184 - -
Rops6g02020 281 Gene3D - 47 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02020 Rops-Chr6 38096897 38098208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02020 19 281 Glycoside Hydrolase AT4G01700 70.677 5.78e-147 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02020 - - gmx:100785397 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02020 6 38096897 38098208 Rops6g02020 6 38096897 38098208 ECH
Rops8g03832 8 79047598 79048711 Rops6g02020 6 38096897 38098208 PCT