Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03828 ATGGCTGAGAGGTGTGTGGATGTGGCTGATGAGATGGTGGGTAGGGTTGAGAGGTGTGTGGATGTGGCTGATGAGATGGTTGGTAGGGCTGAGACTGTGGATATGAATGAGATGGTTGGTAGGGATGAGACGGTGGATATGGCTGAGATGGTTGGTAGGGCTGAGATGGTGGATATGGCTGGGATGGTGGGTATGGCTGGGATGGTGGGTATGGCTGAGATGGTGGGTATGGCTGAGACTGTGGGTATGGCTGAGACTGTGGGTATGGCTGAGACTGAGGATTTGGAATTGGAGGTGCCTCAAAAGGGAAAGGTGGATCTCAGTCATATGAGGAGACCTTCAACAGTTCTAGATGTGCTTCTGGTACTTACTTTGTTCAGTTGTAGCACATGGACAGTGTGGAGCAACACACTTTGCAAAAAGACAAACTTGGGGAGAGTTCGACCTCACAGTGTCAGTATAACCGAATTTGGTGCAGTTGGGGATGGGAACACTCTCAACACAAAAGCATTTCAGAATGCTATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCAAAGCTTTTTGTCCCAGCTGGCAGGTGGTTAACTGGTAGTTTTGATCTCATCAGCCACCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAATGAACTCTGATGATTGGCCAGTTGTTGATCCTCTACCATCTTATGGGCGAGGAAGGGAGTTGCCAGGTGGAAGGCATAAGAGCCTTATTTATGGGCGCAATTTGACTGATGTTATCATAACAGGTAATAATGGAACTATTGATGGTCAAGGGAGTATCTGGTGGGATAAGTTTTGGAACAAAACTCTGGATTATACACGTCCCCATTTGGTAGAATTGATGAATTCAACTGGGGTTCTCATTTCAAATTTAACCTTCCTGGATTCTCCATTTTGGACTATTCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCACAATCCTTGCTCCTCTTAATTCACCAAACACGGATGGGATTGATCCAGACTCTTCTGATGATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTGCCATCAAAAGTGGGTGGGATGAGTATGGAATTGCATTTGGTCGTCCCAGCACAAACATTATCATCCACAGGCTCATTGGGAAAACTCAAACAAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGTGGTGTATCAGAAGTTCATGCAGAAAATATTCACTTTTATGATTCATATAATGCACTCAGAATAAAGACTTCTCCTGGCAGAGGTGGTTATGTTAGAAACATCTATATCTCTAACATGTCCTTGGCTAATGTTGATATTGCTATTAGGTTCACTGGTTTATATGGAGATCATCCAGATGATGCATATGACCCAAATGCTCTACCTGTAATAGAAAAGATTACAATCAAGGATGTGATAGGAAAAAATATAAAAAAAGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTCAACATTTGCCTATCAAACATCAACCTTAATGTGAGCTCAAGCTTTCCATGGAACTGCTCTTATGTTAAAGGATACTCTGACTTGGTTCTGCCAGAAGCTTGTGAGCTTCTCAAGGAGAGAATATTCCCTGAGCATTGTTCAGACTGTTACTATTTGTCAAATCACCAACAAAGTTCCAATGATCAAAACAGAGCAGGACAATTTTCAGGTGACATAAGTTGA 1734 0.4262 MAERCVDVADEMVGRVERCVDVADEMVGRAETVDMNEMVGRDETVDMAEMVGRAEMVDMAGMVGMAGMVGMAEMVGMAETVGMAETVGMAETEDLELEVPQKGKVDLSHMRRPSTVLDVLLVLTLFSCSTWTVWSNTLCKKTNLGRVRPHSVSITEFGAVGDGNTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSMNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVIITGNNGTIDGQGSIWWDKFWNKTLDYTRPHLVELMNSTGVLISNLTFLDSPFWTIHPVYCSQVTVQNVTILAPLNSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIIHRLIGKTQTSAGIAIGSEMSGGVSEVHAENIHFYDSYNALRIKTSPGRGGYVRNIYISNMSLANVDIAIRFTGLYGDHPDDAYDPNALPVIEKITIKDVIGKNIKKAGLIEGIEGDNFVNICLSNINLNVSSSFPWNCSYVKGYSDLVLPEACELLKERIFPEHCSDCYYLSNHQQSSNDQNRAGQFSGDIS* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03828 577 PANTHER PECTIN LYASE-RELATED 123 559 - -
Rops8g03828 577 Pfam Glycosyl hydrolases family 28 247 527 IPR000743 GO:0004650|GO:0005975
Rops8g03828 577 SMART pbh1 437 458 IPR006626 -
Rops8g03828 577 SMART pbh1 319 345 IPR006626 -
Rops8g03828 577 SMART pbh1 408 429 IPR006626 -
Rops8g03828 577 SMART pbh1 380 402 IPR006626 -
Rops8g03828 577 SMART pbh1 346 378 IPR006626 -
Rops8g03828 577 Gene3D - 132 527 IPR012334 -
Rops8g03828 577 SUPERFAMILY Pectin lyase-like 146 542 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03828 Rops-Chr8 78974447 78994337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03828 110 569 Glycoside Hydrolase AT3G62110 67.452 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03828 - - gmx:100817309 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03828 8 78974447 78994337 Rops6g02024 6 38148823 38152735 PCT