Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02024 ATGAAGAGACTTACAACTCTGGTGGATGTGTTTCTGGTACTTGCATTGTTCAGTTGTAGTCCATGGACAGTGTGGAGCAGCTCACGCTGCAATCAGATAAAATTGAAGGAAGTTCGACCACACAGTGTCAGTATTACAGAATTTGGAGCAGTTGGCGATGGGATCACTCTCAATACCAAGGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCCAAGCTTTTTGTCCCAGCTGGCCGGTGGTTGACTGGAAGTTTTGATCTGGTCAGCCATCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTCTGATGATTGGCCAGTTGTGGATCCTCTACCATCATATGGTCGGGGAAGGGAGTTGCCTGGTGGACGGCATAAAAGCCTCATTTATGGGCGCAATTTGACTGATGTCATCATCACAGGTAATAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGGACAAATTTCGGAATAAAACACTGGATTATACACGTCCCCATTTGGTTGAGTTCATGAATTCAACAGAGGTTCTCATTTCAAATTTAACCTTCTTGAATTCACCATTTTGGACTATTCATCCTGTATATTGCAGCCATGTTACAGTTCAGAATGTCACAATCCTTGCGCCTCTTAGTTCACCAAATACAGATGGGATTGATCCGGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGGTTTCCATCAAAAGTGGATGGGATGGATATGGCATTTCATTTGCTCGGCCCAGTACAAACATTATCATCCACAGGCTCATTGGGAAAACAACAAGTGCAGGGATTTCTATTGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTTCATGCAGAAGATATTTTCATATTTGATTCACATGGTGCAATCAGAATAAAGACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTAACATGACCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCAGATGACACTTATGACCCAGATGCTCTACCTGTAATAGAAAGGATTACTATCAAGGATGTGATAGGGGAAAATGTCAAACGCGCAGGCCTTATACAGGGTATAAAAGGTGACGACTTTGTTAATATCTGTCTATCAAACATCACCCTTAATGTGAGTTCAAAACTTCCATGGAACTGCTCTTATGTTAAAGGATACTCTGACTTGGTTTCACCAGAAGCTTGTGAGCTTCTCAAAGAGAGAATATACCCTGATCATTGTTCAGACTGTTACAAGTTGCCAAATCACATAAAGAGTTTGAGTAATCGAAAGAGTGATGCTTGGTTGCTGTCTTGGTAA 1398 0.4134 MKRLTTLVDVFLVLALFSCSPWTVWSSSRCNQIKLKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLVSHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVIITGNNGTIDGQGSIWWDKFRNKTLDYTRPHLVEFMNSTEVLISNLTFLNSPFWTIHPVYCSHVTVQNVTILAPLSSPNTDGIDPDSSDNVCIEDCYISTGDDLVSIKSGWDGYGISFARPSTNIIIHRLIGKTTSAGISIGSEMSGGVSEVHAEDIFIFDSHGAIRIKTSPGRGGYVRNVYISNMTLANVDIAIRFTGLYGEHPDDTYDPDALPVIERITIKDVIGENVKRAGLIQGIKGDDFVNICLSNITLNVSSKLPWNCSYVKGYSDLVSPEACELLKERIYPDHCSDCYKLPNHIKSLSNRKSDAWLLSW* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02024 465 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Rops6g02024 465 Gene3D - 24 418 IPR012334 -
Rops6g02024 465 SUPERFAMILY Pectin lyase-like 37 432 IPR011050 -
Rops6g02024 465 SMART pbh1 271 292 IPR006626 -
Rops6g02024 465 SMART pbh1 237 269 IPR006626 -
Rops6g02024 465 SMART pbh1 327 348 IPR006626 -
Rops6g02024 465 SMART pbh1 210 236 IPR006626 -
Rops6g02024 465 PANTHER PECTIN LYASE-RELATED 22 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02024 Rops-Chr6 38148823 38152735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02024 1 465 Glycoside Hydrolase AT3G62110 68.499 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02024 - - gmx:100786985 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02024 6 38148823 38152735 Rops6g02024 6 38148823 38152735 ECH
Rops8g03828 8 78974447 78994337 Rops6g02024 6 38148823 38152735 PCT