Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03772 ATGGTTGTGCCTTCTCCAACTTCCATCACAACAAGAACCAAGAAAACAAAGGCTATGGGAATCCCAACGATTGACCTATCTATGGAAAGGTCAGAGTTGTCAAAACAAGTGGTGAAAGCTTGTGAGGAATACGGTTTCTTCAAGGTGGTCAACCACAGTGTGTCAAAGGAGGTAATTTCAAGATTGGAAGAGGAGGGAGCTGAGTTTTTCACCAAACCCTACTCAGAGAAGTGTCAAGCTGGTCCAGCCACTCCTTTTGGTTATGGCTTCAAAAATATTGGCTCCAACGGAGATATGGGTAACCTTGAGTATCTCCTACTTCATACTAATCCTCTTTCCATCTTTGAGAGATCCAAAACCATTGCAAACGACTCTACCAAGTTCAGTGATGTTGTGAATGATTACATAGAAGCAGCCAAAGAACTAGCATGTGAGATTCTTGATTTGGTGGCTGAGGGTTTGCGGGTCCCTGATAAGTTCGCACTCAGCAAGCTCATCAGAGACGTCCATAGCGATTCAGTCTTAAGGATCAATCACTACCCTTCCTTGAACCTCAAGAATTTGAAGGGCAACAAGAATAGAGACCCACCAAAACTCAAGAGCAATAATAATAATAATAGAATTGGCTTTGGGGAGCATTCTGACCCTCAAATCTTGACCATCATGCGATCCAACGACGTGGGTGGCCTTCAAATCTCTACCCTCAACGGGTTGTGGATACCTGTCCCCCCAGACCCCAATGAATTCTTCGTCATGGTTGGTGATGCCCTTCAGGTTCTGACCAATGGAAGGTTTATAAGCGTGAGACACAGAGCATTAACCAACACATTAGAGGCAAGGATGTCAATGATGTATTTTGGAGCACCACCACTGAATTGGTGGATCACTCCGCTGCCCAAGATGGTATCACCACCACAAAATCCAAGTCTTTATAAGCCCTTCACTTGGGCCCAATACAAGCAAGCAGCATACTCACTAAGACTTGGAGATTCAAGGCTTGACCTCTTCAAGGCCCAGCAAGATACCCATCTCGTGGCTGCCTCTGAGTCACACATTCAATGTTGA 1065 0.4507 MVVPSPTSITTRTKKTKAMGIPTIDLSMERSELSKQVVKACEEYGFFKVVNHSVSKEVISRLEEEGAEFFTKPYSEKCQAGPATPFGYGFKNIGSNGDMGNLEYLLLHTNPLSIFERSKTIANDSTKFSDVVNDYIEAAKELACEILDLVAEGLRVPDKFALSKLIRDVHSDSVLRINHYPSLNLKNLKGNKNRDPPKLKSNNNNNRIGFGEHSDPQILTIMRSNDVGGLQISTLNGLWIPVPPDPNEFFVMVGDALQVLTNGRFISVRHRALTNTLEARMSMMYFGAPPLNWWITPLPKMVSPPQNPSLYKPFTWAQYKQAAYSLRLGDSRLDLFKAQQDTHLVAASESHIQC* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03772 354 MobiDBLite consensus disorder prediction 186 211 - -
Rops8g03772 354 Pfam 2OG-Fe(II) oxygenase superfamily 198 287 IPR044861 -
Rops8g03772 354 FunFam Gibberellin 2-beta-dioxygenase 2 4 327 - -
Rops8g03772 354 SUPERFAMILY Clavaminate synthase-like 5 330 - -
Rops8g03772 354 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 297 IPR005123 -
Rops8g03772 354 Gene3D - 3 327 IPR027443 -
Rops8g03772 354 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 95 IPR026992 -
Rops8g03772 354 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 21 322 - -
Rops8g03772 354 MobiDBLite consensus disorder prediction 197 211 - -
Rops8g03772 354 PRINTS Isopenicillin N synthase signature 249 275 - -
Rops8g03772 354 PRINTS Isopenicillin N synthase signature 37 54 - -
Rops8g03772 354 PRINTS Isopenicillin N synthase signature 213 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03772 Rops-Chr8 78246028 78250210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03772 3 337 Glycosyltransferase AT5G59530 26.836 7.92e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03772 K04125 - gmx:100779525 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03772 8 78246028 78250210 Rops8g03772 8 78246028 78250210 ECH
Rops8g03772 8 78246028 78250210 Rops6g02057 6 38584979 38588592 PCT