Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02057 ATGGTTGCTCCATCTCCAACTTCCATGATGGTAAGAACCAAGAAAACAAAGGCTATGGGAATTCCAACAATAGACCTTTCCATGGAAAGGTCAGAGTTATCAGAATTGGTGGTGAAAGCCTGCGAGGAATACGGTTTCTTCAAGGTGGTGAACCACAGTGTGCCAAAGGAGGTTATTTCAAGATTGGAAGAGGAGGGAACAGAGTTTTTCTCAAAATCTTCCTCAGAGAAGCGTCAAGCTGGCCCTGCCACTCCTTTTGGTTATGGCTGCAAAAATATTGGCCCCAATGGTGATATGGGTGACCTTGAGTATCTCCTCCTCCATACCAATCCTCTTTCCATATCTGAGAGATCCAAAACCATAGCAAAAGAACCTACCAAGTTCAGTTGTGCCGTGAATGATTATATAGAAGCAGCTAAAGAGTTAACATGTGAGATTCTTGATCTAATAGTAGAGGGTTTGCGGGTCCCAGACAAGTTCTCACTAAGCAAGCTTATCAAAGACGTTCATGGTGACTCACTCCTGAGGATCAATCACTACCCTCCAGTGATTTCAAAGGGCAGCAATAAGAATTGGGACCCATCAAAACTTGATCCACGTCAACTCCAGAGCAATAATAATAATAATACCATTGGCTTTGGGGAGCATTCTGACCCTCAGATCTTGACCATCTTGCGATCCAACAACGTGGGTGGCCTTCAGATTTCAACCCACGACGGGTTGTGGATCCCTGTCGCTCCTGACCCCAATCAATTCTTCGTCATGGTTGGCGATGCCCTCCAGGTGTTGACAAATGGAAGGTTTGTAAGCGTGAGACATAGAGCGTTGACCAACACAATGAAAGCCAGAATGTCAATGATGTACTTTGCAGCACCACCATTGGATTGGTGGGTAACTCCATTGCCAAAGATGGTGACACCTCACAATCCAAGTCTATATAAGCCCTTCACGTGGGCCCAATACAAGCAAGCAGCTTACTCTCTTCGATTGGGTGACACTCGCCTTGATCTCTTCAAGGTTCAACAAAAAGAAGATAGCCATCTCGCACCTGCTTCTCCCTGA 1062 0.4557 MVAPSPTSMMVRTKKTKAMGIPTIDLSMERSELSELVVKACEEYGFFKVVNHSVPKEVISRLEEEGTEFFSKSSSEKRQAGPATPFGYGCKNIGPNGDMGDLEYLLLHTNPLSISERSKTIAKEPTKFSCAVNDYIEAAKELTCEILDLIVEGLRVPDKFSLSKLIKDVHGDSLLRINHYPPVISKGSNKNWDPSKLDPRQLQSNNNNNTIGFGEHSDPQILTILRSNNVGGLQISTHDGLWIPVAPDPNQFFVMVGDALQVLTNGRFVSVRHRALTNTMKARMSMMYFAAPPLDWWVTPLPKMVTPHNPSLYKPFTWAQYKQAAYSLRLGDTRLDLFKVQQKEDSHLAPASP* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02057 353 Pfam 2OG-Fe(II) oxygenase superfamily 172 291 IPR044861 -
Rops6g02057 353 SUPERFAMILY Clavaminate synthase-like 6 332 - -
Rops6g02057 353 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 89 IPR026992 -
Rops6g02057 353 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 292 IPR005123 -
Rops6g02057 353 FunFam Gibberellin 2-beta-dioxygenase 2 4 329 - -
Rops6g02057 353 PRINTS Isopenicillin N synthase signature 216 237 - -
Rops6g02057 353 PRINTS Isopenicillin N synthase signature 37 54 - -
Rops6g02057 353 PRINTS Isopenicillin N synthase signature 252 278 - -
Rops6g02057 353 Gene3D - 2 329 IPR027443 -
Rops6g02057 353 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 21 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02057 Rops-Chr6 38584979 38588592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02057 12 340 Glycosyltransferase AT5G59530 27.193 8.50e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02057 K04125 - gmx:100809097 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02057 6 38584979 38588592 Rops6g02057 6 38584979 38588592 ECH
Rops8g03772 8 78246028 78250210 Rops6g02057 6 38584979 38588592 PCT