LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g03730	ATGGCTTCCACACCCTCACCCTTCACTACTGTCTTCCTCCTCCTCCTTTTGGTGGTCGTCCGGCACACCGGCGAGGCACGTGACCCTTTCGCATGTGACCCAAAAGATGGCACTACGAAGAACTTGCCATTTTGCAAGGTGTCACTGGCGATACCAGAGAGGGTGAAGGACCTCATTGGAAGGTTGACACTGCAAGAGAAGGTTAACCTGCTAGTGAATAGTGCTGCGGCTGTTCCAAGGCTTGGAATCAAAGGCTATGAGTGGTGGTCTGAGGCACTACATGGGGTTTCAAATGTGGGTCCTGGAACCAAGTTTGGAGCTCTGTTCCCTGGTGCTACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCCTTCAATGCATCTTTGTGGGAAGCAATTGGACGGGTTGTGTCGGACGAAGCAAGGGCAATGTACAACGGAGGAGCAGGAGGGCTAACGTATTGGAGCCCAAACGTGAACATTTTCAGAGACCCAAGGTGGGGCCGTGGACAGGAAACTCCCGGTGAGGACCCTGTGCTAGCCGGTAGATATGCTGCCAGTTACGTCAAGGGGCTACAGGGAACTGACGGTAACCGGTTGAAGGTGGCTGCTTGTTGCAAACACTTTACAGCTTATGATCTTGATAATTGGAACGGCATGGATCGCTTCCACTTTAACGCACAGGTGAGTAAGCAGGATAGAGAGGACACATTCGATGTGCCATTCAGGATGTGTGTGAAGGAAGGCAAAGTAGCGAGTGTGATGTGTTCTTACAATCAAGTCAATGGGATCCCTACCTGTGCGGACCCCAACCTACTAAAGAGAACAGTTCGTGGACAGTGGCATCTTGATGGGTACATTGTATCAGACTGTGACTCTGTCGGGGTGTTTTACAGTAACCAACATTATGCATCAACACCAGAAGAAGCTGCTGCCGATGCAATTAAAGCAGGTTTGGATTTAGATTGTGGGCCTTTCTTAGGATTGCACACGCAGGATGCTGTAAAAAAAGGTTTGTTAAAAGAAGTAGATGTGAATGGTGCTTTGATAAATACACTGACAGTCCAAATGAGGTTAGGGATGTTTGATGGAGAGCCATCAGCTCAGGCTTATGGCCACTTGGGTCCAAGAGATGTGTGCAAACCTTCTCACCAAGAACTCGCCCTTGAAGCGGCTAGACAGGGAATTGTGCTACTTAAGAATAAAGCTTCCCTTTTGCCCCTCTCTCAACGTCATCATCGCACAGTGGCTGTTATTGGGCCTAATTCTGATGTCACTGTTACAATGATTGGAAACTATGCGGGTATTGCTTGTGGATATACCAGCCCTTTACAAGGAATAGGAAGATATGCTCGGACTATTCATCAGAAGGGTTGTGAAAATGTTGCTTGTCGTGATGACAAGAAATTTGGGCCTGCTCTAGATGCAGCCCGTCAAGCAGATGCAACTGTTCTAGTTATGGGCTTGGACCAGTCCATTGAAGCTGAAACGGTGGACAGGGTGGGCTTGCTTTTGCCAGGGCATCAACAAGACCTTGTTTCAAAGGTGGCAGCTGTCTCAAAGGGACCAACTATTTTGGTCTTGATGTCTGGTGGACCTATAGATATTACTTTTGCAAAGAATAACCCTAGAGTTGGTGGCATCTTGTGGGCTGGTTATCCGGGCCAAGCTGGTGGTGCTGCCATTGCAGATATTCTATTTGGAACCGCTAACCCAGGAGGCAAACTGCCTGTGACATGGTACCCACAAGAGTACCTAACAAACTTGGCAATGACAAATATGGCAATGAGACCAAGCCGATCAAAAGGGTACCCAGGAAGAACGTATCGATTCTACAATGGCCAAGTGGTGTATCCATTTGGACACGGATTGAGTTACACTAACTTTGTTCATACAGTAGCTAGTGCCCCCACAGTGGTGTCAGTTCCAGTGCATGGCCATCGCCATGGTAATAGCACTGACATATCAAACAAGGCAATTAGAGTGACACATGCAAATTGTGGCAAGCTCTCCATCACCCTTCATGTTGACATTAAAAACATGGGCTCCAGAGATGGCAGTCACACATTGTTAGTGTTCTCTGCTCCACCTGAAGGTGGAGCCCATTGGGCCCTACAGAAGCAATTGGTGGCCTTTGAGAAAGTCCATGTTCCTTCCAAGTCTCAGCAGCGAGTCCAAGTGAATATCCATGTGTGCAAGCTTCTAAGTGTGGTGGATAGGTCTGGGATTAGGAGAATCCCAATGGGGGAACACAGTCTTCACATTGGAGACGTTAAACACTCCGTTTCACTTCAAGCAGAAGCTCTTGGGATTATCAAGTCCTGA	2325	0.4822	MASTPSPFTTVFLLLLLVVVRHTGEARDPFACDPKDGTTKNLPFCKVSLAIPERVKDLIGRLTLQEKVNLLVNSAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGALFPGATSFPQVITTAASFNASLWEAIGRVVSDEARAMYNGGAGGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGRYAASYVKGLQGTDGNRLKVAACCKHFTAYDLDNWNGMDRFHFNAQVSKQDREDTFDVPFRMCVKEGKVASVMCSYNQVNGIPTCADPNLLKRTVRGQWHLDGYIVSDCDSVGVFYSNQHYASTPEEAAADAIKAGLDLDCGPFLGLHTQDAVKKGLLKEVDVNGALINTLTVQMRLGMFDGEPSAQAYGHLGPRDVCKPSHQELALEAARQGIVLLKNKASLLPLSQRHHRTVAVIGPNSDVTVTMIGNYAGIACGYTSPLQGIGRYARTIHQKGCENVACRDDKKFGPALDAARQADATVLVMGLDQSIEAETVDRVGLLLPGHQQDLVSKVAAVSKGPTILVLMSGGPIDITFAKNNPRVGGILWAGYPGQAGGAAIADILFGTANPGGKLPVTWYPQEYLTNLAMTNMAMRPSRSKGYPGRTYRFYNGQVVYPFGHGLSYTNFVHTVASAPTVVSVPVHGHRHGNSTDISNKAIRVTHANCGKLSITLHVDIKNMGSRDGSHTLLVFSAPPEGGAHWALQKQLVAFEKVHVPSKSQQRVQVNIHVCKLLSVVDRSGIRRIPMGEHSLHIGDVKHSVSLQAEALGIIKS*	775

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g03730	774	Pfam	Fibronectin type III-like domain	689	757	IPR026891	-
	Rops8g03730	774	Pfam	Glycosyl hydrolase family 3 C-terminal domain	396	626	IPR002772	GO:0004553\|GO:0005975
	Rops8g03730	774	SUPERFAMILY	(Trans)glycosidases	42	395	IPR017853	-
	Rops8g03730	774	Gene3D	-	54	371	IPR036962	GO:0004553\|GO:0005975
	Rops8g03730	774	FunFam	Probable beta-D-xylosidase 2	651	771	-	-
	Rops8g03730	774	PRINTS	Glycosyl hydrolase family 3 signature	202	218	IPR001764	GO:0004553\|GO:0005975
	Rops8g03730	774	PRINTS	Glycosyl hydrolase family 3 signature	115	134	IPR001764	GO:0004553\|GO:0005975
	Rops8g03730	774	PRINTS	Glycosyl hydrolase family 3 signature	276	294	IPR001764	GO:0004553\|GO:0005975
	Rops8g03730	774	SMART	Fn3_like_2	688	759	IPR026891	-
	Rops8g03730	774	Gene3D	Immunoglobulins	650	770	IPR013783	-
	Rops8g03730	774	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	396	629	IPR036881	GO:0004553\|GO:0005975
	Rops8g03730	774	Gene3D	-	382	627	IPR036881	GO:0004553\|GO:0005975
	Rops8g03730	774	FunFam	probable beta-D-xylosidase 7	54	368	-	-
	Rops8g03730	774	Pfam	Glycosyl hydrolase family 3 N terminal domain	109	326	IPR001764	GO:0004553\|GO:0005975
	Rops8g03730	774	PANTHER	SUGAR HYDROLASE-RELATED	20	762	IPR044993	GO:0009044\|GO:0045493
	Rops8g03730	774	FunFam	probable beta-D-xylosidase 2	381	627	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g03730	Rops-Chr8	77731939	77737497	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g03730	8	774	Glycoside Hydrolase	AT1G02640	74.185	0.0	1192

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g03730	-		-	gmx:100789316	1348.57

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops8g03730	8	77731939	77737497	Rops8g03730	8	77731939	77737497	ECH
	Rops8g03730	8	77731939	77737497	Rops6g02088	6	38965731	38970989	PCT