LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g02088	ATGTTCTCACCCCTCATCACCATCTCCTTGGTCCTCCTCCTCTTTTTGGGTGGCGAGGCACGTGACCCTTTTGCCTGTGACCCTAAGAACACTGCCACAAAGAGCTTGCCGTTTTGCAGGGCTTCATTGCCAGTACCAACAAGGGTGAAGGACCTCATTGGAAGGTTGACATTGCAAGAAAAGGTTACCCTGCTAGTGAACAATGCCGCGGCGGTTCCAAGGCTTGGGATCAAAGGGTATGAATGGTGGTCTGAGGCACTTCATGGGGTTTCAAATGTGGGTCCTGGAACTAAGTTTGGTGGCCAATTCCCAGCCGCAACTAGTTTCCCTCAAGTCATCACCACCGCTGCTTCATTCAATGCATCCTTGTGGGAAGCAATCGGACGGGTTGCCTCGGACGAAGGAAGGGCAATGTACAATGGAGGAATGGCTGGGCTGACATACTGGAGCCCAAACGTGAACATTTTTAGGGACCCACGTTGGGGTCGTGGACAGGAGACTCCCGGTGAGGACCCAATGCTAGCCGGTAGATATGCTGCCAGTTATGTGAGGGGACTACAGGGAACTGACGGTAACCGGTTGAAGGTGGCTGCTTCTTGCAAACACTTTACGGCTTATGATCTTGATAATTGGAACGGTGTGGATCGCTTTCACTTTAATGCAAAGGTTAGCAAGCAGGACATAGAAGACACGTTCAATGTGCCATTCAGAATGTGCGTGAAGGAAGGCAAAGTGGCAAGTGTGATGTGTTCTTACAATCAAGTTAATGGTGTCCCTACCTGTGCAGACCCCAAACTCCTAAAGAGAACAGTTCGTGGTCAATGGCGTCTTGATGGGTACATTGTATCAGATTGTGACTCTGTTGGGGTGTTTTACACCAATCAACATTACACATCAACGCCAGAAGAAGCTGCTGCTGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGGCCTTTCCTAGCATTGCATACACAAAATGCGGTCCAAAAGGGCTTGTTAAGTGAAGCTGATGTGAATGGTGCTTTAGTGAACACACTAACAGTCCAAATGAGGTTAGGGATGTTTGATGGTGAGCCATCAAGTCACCCATATGGTAACCTTGGTCCAAGAGATGTGTGCACCCCAGCTCACCAAGAACTCGCTCTTGAAGCTGCTAGACAAGGGATCGTTCTTCTTAAGAACACTGGTCCTTCTTTGCCTCTCTCCACACGTCGTTACAGGACCGTGGCTGTCATTGGGCCCAATTCTAATGCCACTGTCACAATGATCGGCAACTATGCTGGAATTGCTTGTGGATACACAAGCCCATTACAAGGGATAGGGAGATATGCTAGGACCATTCATGAGCTTGGTTGTGCAAATGTGGCTTGCACTGATGACAAGCAATTTGGGTCGGCTATAAATGCAGCCCGTAAAGCAGATGCCACGGTTCTAGTTATGGGATTGGACCAGTCTATTGAGGCTGAAACCATGGACAGGGCTGGCTTGCTTCTTCCTGGGCATCAACAAGACCTTGTGTCAAAGGTAGCAGCTGCCTCGAAGGGCCCAACTATTTTGGTCTTAATGTCTGGTGGGCCTGTGGACATAACTTTTGCAAAGAATGACCCACGAATAGTAGGTATCTTTTGGGCTGGTTATCCTGGTCAAGCGGGTGGTGCTGCCATTGCAGATATCTTGTTTGGAAATGCTAACCCTGGAGGCAGGCTACCCATGACATGGTATCCACAAGGGTATCTTCAAAACTTGCCAATGACAAATATGGCAATGCGATCAAGCAGTTCCACAGGGTACCCAGGAAGAACCTATCGATTTTACGATGGTCCAGTTGTGTATCCATTTGGTTATGGATTGTCCTACACACACTTTGTTCATACATTAGCTAGTGCACCTAAAATGGTCTCAGTTCCAGTGGATGGACACCGCCATGGCAATAGCTCAAACATTTCAAACAAGGCAATTAGAGTGACACATGCACGATGTGGCAAGCTTTCTATTAACCTTCACGTCGATGTTAAAAATGTTGGGTCCAAAGATGGCACTCACACTTTATTAGTGTACTCAGCACCACCTGCAGGTAATGGCCATTGGGCACCACACAAACAACTAGTGGCCTTTGAGAAAGTCCATGTTCCTGCTAAGGCTCAGCAGCGAGTAAGAGTGAATATTCATGTTTGCAAGCTCCTGAGTGTGGTTGACAGGTCTGGGACTAGGAGAATTCCAATGGGGGAACACAATCTTCACATTGGAGATGTTAAACACTCTTTATCACTTCAAGCAGAAACACTTGGGATTATTAAGTCCTGA	2307	0.4768	MFSPLITISLVLLLFLGGEARDPFACDPKNTATKSLPFCRASLPVPTRVKDLIGRLTLQEKVTLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEAIGRVASDEGRAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPMLAGRYAASYVRGLQGTDGNRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFNVPFRMCVKEGKVASVMCSYNQVNGVPTCADPKLLKRTVRGQWRLDGYIVSDCDSVGVFYTNQHYTSTPEEAAADAIKAGLDLDCGPFLALHTQNAVQKGLLSEADVNGALVNTLTVQMRLGMFDGEPSSHPYGNLGPRDVCTPAHQELALEAARQGIVLLKNTGPSLPLSTRRYRTVAVIGPNSNATVTMIGNYAGIACGYTSPLQGIGRYARTIHELGCANVACTDDKQFGSAINAARKADATVLVMGLDQSIEAETMDRAGLLLPGHQQDLVSKVAAASKGPTILVLMSGGPVDITFAKNDPRIVGIFWAGYPGQAGGAAIADILFGNANPGGRLPMTWYPQGYLQNLPMTNMAMRSSSSTGYPGRTYRFYDGPVVYPFGYGLSYTHFVHTLASAPKMVSVPVDGHRHGNSSNISNKAIRVTHARCGKLSINLHVDVKNVGSKDGTHTLLVYSAPPAGNGHWAPHKQLVAFEKVHVPAKAQQRVRVNIHVCKLLSVVDRSGTRRIPMGEHNLHIGDVKHSLSLQAETLGIIKS*	769

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g02088	768	Pfam	Fibronectin type III-like domain	683	751	IPR026891	-
	Rops6g02088	768	FunFam	Probable beta-D-xylosidase 2	645	765	-	-
	Rops6g02088	768	Gene3D	Immunoglobulins	645	765	IPR013783	-
	Rops6g02088	768	SMART	Fn3_like_2	682	753	IPR026891	-
	Rops6g02088	768	PRINTS	Glycosyl hydrolase family 3 signature	270	288	IPR001764	GO:0004553\|GO:0005975
	Rops6g02088	768	PRINTS	Glycosyl hydrolase family 3 signature	196	212	IPR001764	GO:0004553\|GO:0005975
	Rops6g02088	768	PRINTS	Glycosyl hydrolase family 3 signature	109	128	IPR001764	GO:0004553\|GO:0005975
	Rops6g02088	768	Pfam	Glycosyl hydrolase family 3 N terminal domain	102	344	IPR001764	GO:0004553\|GO:0005975
	Rops6g02088	768	Pfam	Glycosyl hydrolase family 3 C-terminal domain	390	620	IPR002772	GO:0004553\|GO:0005975
	Rops6g02088	768	FunFam	probable beta-D-xylosidase 7	48	362	-	-
	Rops6g02088	768	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	390	623	IPR036881	GO:0004553\|GO:0005975
	Rops6g02088	768	Gene3D	-	376	621	IPR036881	GO:0004553\|GO:0005975
	Rops6g02088	768	SUPERFAMILY	(Trans)glycosidases	36	389	IPR017853	-
	Rops6g02088	768	PANTHER	SUGAR HYDROLASE-RELATED	19	755	IPR044993	GO:0009044\|GO:0045493
	Rops6g02088	768	FunFam	probable beta-D-xylosidase 2	375	621	-	-
	Rops6g02088	768	Gene3D	-	48	364	IPR036962	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g02088	Rops-Chr6	38965731	38970989	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g02088	11	768	Glycoside Hydrolase	AT1G02640	73.822	0.0	1189

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g02088	-		-	gmx:100798630	1427.54

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops6g02088	6	38965731	38970989	Rops6g02088	6	38965731	38970989	ECH
	Rops8g03730	8	77731939	77737497	Rops6g02088	6	38965731	38970989	PCT