Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03706 ATGCAACTGTTCTTTCACTGGTTTCAGAAGTTTCTTTCCCACTTGCAGTTTCAACTTGTTTCTGCTCAAAGTCACATGAAGGGGCTAGTTGCTGTACTTTTCCTTGTAGCATTAAGCACTGCTTTGGAAAGCAATGGAGAAGATAATCATGGACCATGTAAACAGAAAGCATTGGTAGCTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGGGCAGTTGGAGACGGAATAACGCTGAACACAGTAGCATTCCAAAATGCAATATTTTATCTCAAGTCATTTGCTGATAAAGGTGGTGCTCAGCTATATGTTCCATCTGGTAGATGGCTCACTGGAAGTTTTAACCTTACCAGCCATCTCACTTTGTTCCTTGAGAGTGGTGCTACCATCATTGCATCCCAGGATTATGCTCATTGGCATGTAGTGGATTCCCTTCCTTCTTATGGTAGAGGAATTGATGTTCCAGGTGGGAGGTATCGTAGCTTGATCTATGGCCAGAATTTAAGTGATGTGGTGATTACAGAATTTGTTGGTTCTGTTGATGTCATAATTTCCAATTTGACATTTTTAAATTCTCCTGCTTGGGACATCCATCCAGTATATTGCAGCAATGTTCAAATTCAGAACATAACTGCTCATGCATCAGCTGAATCCCCTTATACCAGCGGTATAGTTCCAGATTCTTCTCAGTATGTTTGCATTGACAACAGTAACATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGATGGGATCAGTATGGAATTGCCTATGGAAAACCAACCTCAAGTGTCCATATCAGGAATGTTAAGCTACAATCATCATCAGGTGCTGGCCTTGCATTTGGGAGTGAGATGTCTGGTGGCATATCTGATATAAATGCAGAACAGCTTCATATACTCAACTCGCGCATTGGCATTGAGCTGAAGACAACTAGGGGTAGAGGTGGCTATATGAAAGGCATCTTCATTTCTGATGCTGAATTGGAAAATATTGACTTGGGTATCAGCATGACAGGATACTCAGGTTTCCATCCAGATGATAAGTATGATGCAAGTGCACTTCCAGTTGTTGGTGGCATTACTTTTAAGAATGTGATTGGTGCAAATATTAGTGTTGCTGGGAATTTTTCAGGAATAGTTGATTCACCATTCACCGCAATCTGTCTTTCAAACGTCACTTTTTCTATCCATTCAGAGCCGTCTCCTTCATGGTTCTGTTCTCATGTAAGAGGTTTCTCTGAGGAGGTGTTTCCTGAGCCATGTCCTGATCTCCAAAGCTCATATTCACTGTTTTCCTTTTCTTGCTTTTCTTCCCTTTATCCAACCTTTAGTTATATCTCAAGCTTATAG 1356 0.4137 MQLFFHWFQKFLSHLQFQLVSAQSHMKGLVAVLFLVALSTALESNGEDNHGPCKQKALVARPHSVSILEFGAVGDGITLNTVAFQNAIFYLKSFADKGGAQLYVPSGRWLTGSFNLTSHLTLFLESGATIIASQDYAHWHVVDSLPSYGRGIDVPGGRYRSLIYGQNLSDVVITEFVGSVDVIISNLTFLNSPAWDIHPVYCSNVQIQNITAHASAESPYTSGIVPDSSQYVCIDNSNISTGHDAIVLKSGWDQYGIAYGKPTSSVHIRNVKLQSSSGAGLAFGSEMSGGISDINAEQLHILNSRIGIELKTTRGRGGYMKGIFISDAELENIDLGISMTGYSGFHPDDKYDASALPVVGGITFKNVIGANISVAGNFSGIVDSPFTAICLSNVTFSIHSEPSPSWFCSHVRGFSEEVFPEPCPDLQSSYSLFSFSCFSSLYPTFSYISSL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03706 451 Pfam Glycosyl hydrolases family 28 171 410 IPR000743 GO:0004650|GO:0005975
Rops8g03706 451 Gene3D - 52 411 IPR012334 -
Rops8g03706 451 PANTHER PECTIN LYASE-RELATED 175 430 - -
Rops8g03706 451 SUPERFAMILY Pectin lyase-like 52 427 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03706 Rops-Chr8 77419754 77422834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03706 26 439 Glycoside Hydrolase AT3G16850 57.303 1.02e-176 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03706 - - gmx:100787190 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03706 8 77419754 77422834 Rops8g03706 8 77419754 77422834 ECH
Rops8g03706 8 77419754 77422834 Rops6g02113 6 39382810 39386385 PCT