Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02113 ATGAAACGAAATGAAATGCCTAGCTGGCTTTTTTCCTTTATAGCCGTCGCTTTCAATTACCTCTCCCCGTTTGTTTTCTTGTTTCTAGTGCTTGGTTGGCATTGTATACGAAGTAGCACTGCTCTCTCCCTCTTGTTCTGTCCTTATGTTCTTGTTCTCTACCCTCTTCTTCACTCACTCCACGCTGTGTTGTTCTTCCACTGCTTTCACTTTTTGGTGGCTGAAGGAGAGGGGAACACACCCATGAAGAGGCTAGTAACTGTGCTTTTACTTATAGCAATAAGCACTGCTCTGGAAAGCAATGGAGAAGATGATCATGGACCATGTAAACAGAATGAATTGGATCCAAGGCCTCACAGTGTGTCAATAACAGAGTTTGGCGCAGTTGGAGATGGAAAAACATTGAACACGGTTGCATTCCAAAATGCAATTTTTTATGCCAAGTCATTTGCTGATAAAGGTGGTGCTCAACTATATGTCCCATCTGGCAAATGGCTTACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTATTCCTTGAAAGAGGCGCAACCATCATTGCATCACAGGATTATTCACACTGGAGTGTAGTGGATCCCTTACCTTCATATGGTCGAGGAATTGATGTTCCAGGTGGGAGATATAGCAGCTTGATATATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGGAACTATTGATGGCCAGGGTTCTGTCTGGTGGAACCTGATCAGTACCCATTCCTTAAATTACAGCAGACCACATATTGTAGAACTTGTTGGTTCAGATAATATCATAATCTCAAATTTGACATTTTTAAACTCTCCTGCTTGGGGCATCCATCCAGTATATTGCAGCAACGTTCAAATTCAGAACATAACAGCTCATGCACCAGCTGAATCCCCTTACACAAGTGGTATAGTTCCAGATTCTTCTGAGTACGTTTGCATTGACAACAGCAATATTAGCACCGGTCATGATGCAATTGTGCTGAAAAGTGGTTGGGATCAATATGGAATTGCCTATGGCAAACCAACCTCGAGTGTCCACATCAGGGGTGTTTACCTACAATCATATTCCGGTGCTGGCTTAGCATTTGGAAGTGAGATGTCTGGAGGCATATCCAATATAATTGCAGAGCAGCTCCATATTATCAACTCAACAATTGGCATTGAACTGAAGACAACTAGGGGTAGAGGTGGCTATATGAAAGACATCTTCATTTCTGATGCAAAATTGGAAAATATATACTTGGGTATCAGCATGACGGGATACTATGGTTCCCATCCAGATGACAAGTATGATCCTAGTGCAGTTCCGATCGTTGGTAGCATTACTTTTAAGAATGTGATTGGTGCAAATACTGCTATTGCTGGGAATTTTTCAGGCATTGTTGATTCTCCGTTCACACCCATCTGTCTTTTGAACGTGACTTTTTCTATCAGTTGTGAGTCATCACCTTCATGGTTTTGTTCTAATGTAAAGGGTTTCTCTGAGGCGGTGTTCCCTGAGCCATGTCCCGATCTGCAGAGCTCATATTCAAACTTTTCCTCTTGCTTTTCTTACCAACATCCATCATATAGTTATGTCTCAAGCGCATGA 1611 0.4209 MKRNEMPSWLFSFIAVAFNYLSPFVFLFLVLGWHCIRSSTALSLLFCPYVLVLYPLLHSLHAVLFFHCFHFLVAEGEGNTPMKRLVTVLLLIAISTALESNGEDDHGPCKQNELDPRPHSVSITEFGAVGDGKTLNTVAFQNAIFYAKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYSHWSVVDPLPSYGRGIDVPGGRYSSLIYGQNLSDVVITGDNGTIDGQGSVWWNLISTHSLNYSRPHIVELVGSDNIIISNLTFLNSPAWGIHPVYCSNVQIQNITAHAPAESPYTSGIVPDSSEYVCIDNSNISTGHDAIVLKSGWDQYGIAYGKPTSSVHIRGVYLQSYSGAGLAFGSEMSGGISNIIAEQLHIINSTIGIELKTTRGRGGYMKDIFISDAKLENIYLGISMTGYYGSHPDDKYDPSAVPIVGSITFKNVIGANTAIAGNFSGIVDSPFTPICLLNVTFSISCESSPSWFCSNVKGFSEAVFPEPCPDLQSSYSNFSSCFSYQHPSYSYVSSA* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02113 536 Gene3D - 108 502 IPR012334 -
Rops6g02113 536 SUPERFAMILY Pectin lyase-like 113 513 IPR011050 -
Rops6g02113 536 Pfam Glycosyl hydrolases family 28 217 498 IPR000743 GO:0004650|GO:0005975
Rops6g02113 536 PANTHER PECTIN LYASE-RELATED 89 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02113 Rops-Chr6 39382810 39386385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02113 82 524 Glycoside Hydrolase AT3G16850 60.586 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02113 - - gmx:100801823 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02113 6 39382810 39386385 Rops6g02113 6 39382810 39386385 ECH
Rops8g03706 8 77419754 77422834 Rops6g02113 6 39382810 39386385 PCT