Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03696 ATGTCTTGGAGGAGGGACTCTGCTCTCTCTGATGGTTTTGCCATGCATGTTGATTTGGTTGGAGGGTACTTCGATGCAGGGGACAATGTCAAGTTTGGTTTTCCAATGGCTTTCACCACCACCATGCTCTCTTGGAGTGTTATTGAGTTCGGTGGGGTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCTATTCGCTGGGCCACTGATTATCTTCTCAAAGCTACTGTACATCCAGACACCATTTATGTTCAGGTGGGAGATGCTAAGAAGGACCATGCTTGTTGGGAGAGACCTGAGGACATGGATACCCCAAGAAACGTGTATAAGATAGATAAAAACAACCCTGGTTCTGATGTGGCTGCGGAAACTGCTGCGGCTCTTGCAGCTGCTTCCTTGGCTTTTAGAAGAACTGACCCCACCTACTCCAAAACTTTAGTTAGGAGGGCTATTAGAGTTTTTCAGTTTGCTGATAAGTACAGGGGACCCTACAGCAATGGCTTGAAGCCCATTGTTTGCCCCTTCTATTGCTCCTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCTTGGCTGCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAAGGTTAACGGACAGATCCTTGGGGCTGCAGAGTTTGACAATACATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATACTGCTTTCCAAGGAATTCCTTGTTAAAAGGGTGCAATCCCTTCATGACTACAAGGGTCATGCGGACAATTTTATATGTTCTGTTATCCCCGGGGGGCCTTCCTCTTCCTCCCAATATACCCCAGGTGGGCTTCTGTTCAAGATGAGTGATAGCAACATGCAATATGTCACATCTACCTCCTTCCTCCTCTTAACCTATGCCAAATACTTGACCTCAGCCCATATGGTTGTGAACTGTGGTGGAACACATGTAACTCCAAAGATGCTCCGGGCTATAGCCAAAAAACAGGTGGATTACTTGCTAGGAGACAACCCCTTGAAAATGTCCTACATGGTGGGGTATGGTCCTAGGTACCCAAGAAGGATACACCATAGGGGCTCATCCCTTCCGTCTATTGCTGTTCACCCTAGTAAGATCCAATGCTCAGCAGGATTCAGTGTTATGAACTCACAATCCCCAAACCCCAACATTCTAGTGGGTGCTGTTGTTGGGGGACCAGATCTGCATGATAGGTTCCCTGATGAACGGTCAGATTATGAGCAATCGGAGCCAGCTACTTATATCAATGCACCTCTTGTAGGAGCACTGGCTTATCTTGCACACTCATTTGGCCAACTTTAA 1320 0.4689 MSWRRDSALSDGFAMHVDLVGGYFDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELQNAREAIRWATDYLLKATVHPDTIYVQVGDAKKDHACWERPEDMDTPRNVYKIDKNNPGSDVAAETAAALAAASLAFRRTDPTYSKTLVRRAIRVFQFADKYRGPYSNGLKPIVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQILGAAEFDNTFGWDNKHVGARILLSKEFLVKRVQSLHDYKGHADNFICSVIPGGPSSSSQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAHMVVNCGGTHVTPKMLRAIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPSKIQCSAGFSVMNSQSPNPNILVGAVVGGPDLHDRFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03696 439 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 405 423 IPR033126 -
Rops8g03696 439 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 332 358 IPR018221 -
Rops8g03696 439 SUPERFAMILY Six-hairpin glycosidases 2 437 IPR008928 GO:0005975
Rops8g03696 439 FunFam Endoglucanase 1 437 - -
Rops8g03696 439 Gene3D - 1 439 IPR012341 GO:0005975
Rops8g03696 439 PANTHER ENDO-1,4-BETA-GLUCANASE 2 434 - -
Rops8g03696 439 Pfam Glycosyl hydrolase family 9 2 429 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03696 Rops-Chr8 77274436 77276639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03696 1 435 Glycoside Hydrolase AT1G02800 79.770 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03696 K01179 - gmx:100793900 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03696 8 77274436 77276639 Rops8g03696 8 77274436 77276639 ECH
Rops8g03696 8 77274436 77276639 Rops6g02122 6 39521667 39524040 PCT