Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02122 ATGTCTTGGAGAAGGGACTCTGGCCTCTCTGATGGCTCTGCCATGCATGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGATAATGTCAAGTTTGGTTTTCCCATGGCCTTTACCACCACTATGCTTTCATGGAGTGTTATTGAGTTTGGTGGGCTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGCTACTGATTATCTTCTCAAAGCTACTGCACATCCAAACACCATTTATGTTCAGGTGGGAGATGCTAAGAAGGACCATGCTTGTTGGGAGAGACCCGAGGACATGGACACTCCAAGAAGTGTCTTTAAGGTAGATGTAAACAACCCTGGTTCAGAAGTTGCCGCGGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTGGTTTTCAGAAGAAGTGATCCCACATACTCCAAGATTTTAGTCAGAAGGGCTATCAGGGTCTTCCAATTTGCTGATAAATACAGGGGATCCTATAGCAATGCCTTGAAGCCCATTGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCTTGGCTGCACAAAGCTACCAAGAATCCAATGTACCTAAACTACATTCAAGTTAATGGCCAGATCCTTGGGGCCGCAGAGTATGACAACACCTTTGGGTGGGATAACAAGCATGTGGGAGCAAGGATACTTCTTTCCAAGGAATTTCTTGTTCAGAAGGTACAATCCCTCCATGATTACAAGGGTCATGCTGATAATTTCGTGTGTTCTCTAATTCCCGGAGCCTCTTCTGCCCAATATACCCCAGGTGGGCTTTTGTTCAAGACGAGTGATAGTAACATGCAGTATGTCACATCCACTACCTTCTTACTGTTAACATATGCCAAATACTTGACCTCATCTCACACGGTTGTGAACTGTGGGGGAACCACAGTTACCCCAAAGAGGCTCAGGACCATAGCCAAGAAACAGGTGGATTACTTGCTAGGTGACAACCCCTTGAAGATGTCATACATGGTGGGGTATGGTCCAAGGTACCCACAAAGGATACACCACAGGGGCTCATCTCTTCCCTCCACTAGGGTACACCCAGGAAAGATCCAGTGTTCAGCAGGTTTCAGTGTGATGAATTCACAATCCCCCAACCCCAACATTCTAGTAGGCGCTATTGTTGGGGGACCAGACCAGCATGATAGATTCCCAGATGAAAGATCAGATTATGAGCAATCAGAGCCAGCTACTTATATTAACGCACCCCTTGTAGGAGCTCTGGCTTATCTAGCACACTCATTTGGTCAGCTCTAG 1314 0.4696 MSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQNAREAIRWATDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKVDVNNPGSEVAAETAAALAAASLVFRRSDPTYSKILVRRAIRVFQFADKYRGSYSNALKPIVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIQVNGQILGAAEYDNTFGWDNKHVGARILLSKEFLVQKVQSLHDYKGHADNFVCSLIPGASSAQYTPGGLLFKTSDSNMQYVTSTTFLLLTYAKYLTSSHTVVNCGGTTVTPKRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPQRIHHRGSSLPSTRVHPGKIQCSAGFSVMNSQSPNPNILVGAIVGGPDQHDRFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02122 437 Pfam Glycosyl hydrolase family 9 2 427 IPR001701 GO:0004553|GO:0005975
Rops6g02122 437 Gene3D - 1 433 IPR012341 GO:0005975
Rops6g02122 437 SUPERFAMILY Six-hairpin glycosidases 2 435 IPR008928 GO:0005975
Rops6g02122 437 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 330 356 IPR018221 -
Rops6g02122 437 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 403 421 IPR033126 -
Rops6g02122 437 PANTHER ENDO-1,4-BETA-GLUCANASE 2 432 - -
Rops6g02122 437 FunFam Endoglucanase 1 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02122 Rops-Chr6 39521667 39524040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02122 1 433 Glycoside Hydrolase AT1G02800 79.677 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02122 K01179 - gmx:100777718 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02122 6 39521667 39524040 Rops6g02122 6 39521667 39524040 ECH
Rops8g03696 8 77274436 77276639 Rops6g02122 6 39521667 39524040 PCT