Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03641 ATGGGAGTTGTAACTCTTGGTGAATTGAAGCCTAGCATTTCAGGGAAAAGGACATTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGCCAATATCTGATGTCTCTAGTGATCTCACCATTGAAGTAGGAGGATCAACCTTTGCACTTCACAAGTTTCCTCTTGTTTCTCGGAGTGGAAGAATTAGGAAGCTGCTGTTAGAAGCAAAAGATTCAAAAGGTTCACGCATAAGTCTCCCAACTGTGCCAGGTGGTGCAGAAGCATTTGAGCTAGCTGCCAAATTCTGCTATGGAATTAATGTTGAATTCACCCTCTCAAATGTTGCTATGCTACGTTGCACAGCTCATTATCTTGAAATGACAGAAGAATTTGCAGAAAAAAACTTGGAGACAAGAGTTGAAGCATATCTAAAGGATATAGTGCTCCCTAATACATCAAGCACTATATTTGTTCTTCACCGTTGTGAGACTCTTCTGCCCATATCAGAAGAAATAAACCTTGTTAACAGGCTAATCAATGCAATTGCAAATAACGCATGTAAAGAGCAACTTACCTCTGGCTTGCTAAAACTTGACCACACTTTCCCTTCTAAAACCATATCAACCATGGAACCAGAAACACCCTCAGATTGGTGGGGAAAGTCTTTCAATGTTCTTAATCTTGATTTCTTCCAGAGAGTTATATCTGTTGTGAAGTCAAAGGGTCTAAAACAAGACATGATCAGCAAAATATTGATAAACTATGCAAATAGTTCTCTTCAGGGGATTGGTGTTAGGGACCCCCATGTGGTGAAAGGAAGTTTACTTGACTTAGAATTGCAGAAGGAACAAAGGGTCATTGTTGAAACTTTAGTTGGCTTACTCCCAACTCAATCAAGGAAAAGCCCGGTTCCAATGGCATTTCTCTCATGTTTATTGAAAGCTGCAATAGCAACATCAGCATCAACTCCTTTCAGATGTGATTTGGAGAGGCGAATTGGTCTACAACTTGACCAAGCAATTCTTGAAGACATCCTAATTCCAACAAATTCACCTCAAAACACCCACAGCACAATGTATGATACGGATTCAATTTTGAGGATCTTTTCTATTTTTCTAAACTTGGATGAAGAGGATGATGATGAAGATAGTCACTTCAGAGATGAAAGCCAAATGATGTATGAATATGAGTTTGACAGTCCTGGATCTCCAAAACAAAGCTCAATTCTAAAGGTATCCAAATTATTGGACAATTATCTTGCTGAAGTAGCACTAGACTCAAACTTATTGCCATCAAAATTCATAGCACTTGCGGAACTACTTCCAGATCATGCACGTGTTGTAAGTGATGGACTCTATAGAGCTGTTGATATCTTCCTTAAGGTTCATCCAAACATGAAGGACTCAGAGAGATACCGCCTTTGCAAAACCATTGATTGTCAGAAGCTGTCTCAAGAAGCATGCAGCCATGCAGCACAAAATGAAAGGCTCCCAGTTCAGATGGCAGTACAAGTTCTTTACTTTGAGCAAATGAGGCTTCGCAATGCCATGAATGCAGGACACAATCAATTGTTCTTTGGTGGGATTCATGGTCAATTCCCTCAACGTTCAGGCAGTGGTGTAGGAAGTGGAGCCATTTCTCCTAGAGATAACTATGCATCTGTAAGAAGAGAGAACCGAGAGCTGAAACTTGAAGTTGCAAGAATGAGAATGAGGCTAACTGATTTGGAGAAAGACCATGTTTCTATGAAGCAGGAGCTTGTGAAGTCTAATCCTGCCAACAAGTTGTTCAAATCATTCACTAAAAAGCTAAGCAAGCTCAATGCTCTATTCCGTATAAACAGTGTTGGTGGCATGACTAGTTCACATACTCGGTTCCCTTTCCCAAAGAGAAGGCGCCACTCAGTTTCATGA 1896 0.4045 MGVVTLGELKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGGSTFALHKFPLVSRSGRIRKLLLEAKDSKGSRISLPTVPGGAEAFELAAKFCYGINVEFTLSNVAMLRCTAHYLEMTEEFAEKNLETRVEAYLKDIVLPNTSSTIFVLHRCETLLPISEEINLVNRLINAIANNACKEQLTSGLLKLDHTFPSKTISTMEPETPSDWWGKSFNVLNLDFFQRVISVVKSKGLKQDMISKILINYANSSLQGIGVRDPHVVKGSLLDLELQKEQRVIVETLVGLLPTQSRKSPVPMAFLSCLLKAAIATSASTPFRCDLERRIGLQLDQAILEDILIPTNSPQNTHSTMYDTDSILRIFSIFLNLDEEDDDEDSHFRDESQMMYEYEFDSPGSPKQSSILKVSKLLDNYLAEVALDSNLLPSKFIALAELLPDHARVVSDGLYRAVDIFLKVHPNMKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQMRLRNAMNAGHNQLFFGGIHGQFPQRSGSGVGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSNPANKLFKSFTKKLSKLNALFRINSVGGMTSSHTRFPFPKRRRHSVS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03641 631 SMART BTB_4 38 130 IPR000210 GO:0005515
Rops8g03641 631 Pfam NPH3 family 211 482 IPR027356 -
Rops8g03641 631 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Rops8g03641 631 PANTHER OS12G0117600 PROTEIN 34 587 IPR043454 -
Rops8g03641 631 ProSiteProfiles NPH3 domain profile. 211 506 IPR027356 -
Rops8g03641 631 FunFam BTB/POZ domain-containing protein At1g03010 16 134 - -
Rops8g03641 631 Pfam BTB/POZ domain 37 123 IPR000210 GO:0005515
Rops8g03641 631 Coils Coil 546 580 - -
Rops8g03641 631 Gene3D Potassium Channel Kv1.1; Chain A 21 138 IPR011333 -
Rops8g03641 631 SUPERFAMILY POZ domain 22 123 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03641 Rops-Chr8 76605258 76609206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03641 1 456 EF-hand Containing Proteins AT2G47860 60.412 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03641 - - gmx:100776688 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03641 8 76605258 76609206 Rops8g03641 8 76605258 76609206 ECH
Rops8g03641 8 76605258 76609206 Rops6g02185 6 40265195 40269610 PCT