Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03606 ATGTCGATATTATCAAGCATGGACATGCCTACAATGAATGTGGACCTTGGGCCTGAGAAGATTGAGAATGAGAAACAGGGAGGTGCCTTGTTCCATTGTGATCTTTGTGATACAGAAGTAGTTCACAAGTTGGCTCAAATGTTCCTTCCTGGACTAGCCTCTGCTTGTGTTGATAACACATCAGGAGATCTCTTCAAGTCTCCTGGGTCAGTGGCTGTTGATTTGAGAAAGGAAATGTTAGAGTATCTTACCCAGAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTGGAAGGCGGTCCTGACGGTGAAGTATCGGATCATCCTTTTGATATCATTTCCAATTTTGTTGATGACTATGCTAGTTCAAAGAGGAATTTGTTTAGTAGGGTTTCAGGATGGCTGCTAAGTGAAAAGAGAGAAGACAAAATAGAAGATTTTGTTCAAGAGATGGAAATGAATGGTTTTTGGACGCTTGATAGAAGAGAAGCAATTGCAGAAACTTTGCTTAAGAATGTTGACTTTGAGAACTCATTTCATTGCAGCATGAAGTTTGATTCTGCAGAAGAACTTGATAATCATGTTGACAATTGCGACTTTAGACCTATGATCTGCGAAAATGAGGGATGCAATACCAGATTTTGTGCTGGTCATTTGGAGAAGCATGATTCAACTTGTCCTTTCAAGATTATTCCATGTGAACAAAGATGTTCAGCTAGCATTATGAGACGGGATATGGACAGGCACTGTATAACTGTTTGTCCAATGAAGCTAGTAAATTGTCCTTTTTATGCAGTGGGTTGTAGGTCTGCTGTTGCACAATGTATGATTGAAAAACATCGTTCAGATGACGTTAATTCTCATTTGTGGAACTTGCTTAAAGGCATCTACAAGGAAGCATCTGGGGATGATCTTCAACGACGAGTGGAGCAAATTATACAGGCATCATCAACCGGCGATTTAGCAAAGGCTCGGGATGTTAGATCTTTAAAATTCATTGTCAAGGATATTGAAGCTAAGCTAGGGCCTATGGAAATCAGTGTTGTGGAGAAAAATAGTACAGAGACTACTGTCAAGAATGAGGATAAGCAAGACAGTAACACCATTTTGAACGGCAGTGAACAGAGCACACAAGCTTCACATGTGGATAATTCATCAGACAAAGCTGAAGTGAGTGACAAGCATAGTGCAGAGAATACTGCCAACAATGAAGATAGTGAACATAGTCACATTGAAAACAAGGACAATGGAGAGCAGACACAGACTTCAAAAGTCGCCAAGTTACCTGATAAAGCTGAAATTGACCTTGTGAATGAGGACAGTGCACAGATTAACAACGAGAACAAAGATGCTGCAACTAATGAATTAAAAATCAAGGGCCACGAAGAGAACACTCAGACAAATATGGAAAATTTATCAGAAGAAACCGGTGCCACAAACGAGGACATTGCAGCGAATAGCATAAAAAACAGATGTATTGAAGACAGTACCATCAAAGATAAGGATAATGAACAGAGCATACAGAATTTGAAAATGGAAACTAAGGGTAGTGCAGAGAATAATGTCAAGAACAAAGATATTGAAGATGATAACTTAAAAGATAGCATGCAGACTTAA 1617 0.3927 MSILSSMDMPTMNVDLGPEKIENEKQGGALFHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKSPGSVAVDLRKEMLEYLTQRSESFVAESVILEGGPDGEVSDHPFDIISNFVDDYASSKRNLFSRVSGWLLSEKREDKIEDFVQEMEMNGFWTLDRREAIAETLLKNVDFENSFHCSMKFDSAEELDNHVDNCDFRPMICENEGCNTRFCAGHLEKHDSTCPFKIIPCEQRCSASIMRRDMDRHCITVCPMKLVNCPFYAVGCRSAVAQCMIEKHRSDDVNSHLWNLLKGIYKEASGDDLQRRVEQIIQASSTGDLAKARDVRSLKFIVKDIEAKLGPMEISVVEKNSTETTVKNEDKQDSNTILNGSEQSTQASHVDNSSDKAEVSDKHSAENTANNEDSEHSHIENKDNGEQTQTSKVAKLPDKAEIDLVNEDSAQINNENKDAATNELKIKGHEENTQTNMENLSEETGATNEDIAANSIKNRCIEDSTIKDKDNEQSIQNLKMETKGSAENNVKNKDIEDDNLKDSMQT* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03606 538 MobiDBLite consensus disorder prediction 511 538 - -
Rops8g03606 538 MobiDBLite consensus disorder prediction 518 538 - -
Rops8g03606 538 MobiDBLite consensus disorder prediction 460 483 - -
Rops8g03606 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 287 IPR013083 -
Rops8g03606 538 SUPERFAMILY TRAF domain-like 209 277 - -
Rops8g03606 538 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 30 434 - -
Rops8g03606 538 MobiDBLite consensus disorder prediction 465 483 - -
Rops8g03606 538 MobiDBLite consensus disorder prediction 352 430 - -
Rops8g03606 538 MobiDBLite consensus disorder prediction 363 385 - -
Rops8g03606 538 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Rops8g03606 538 ProSiteProfiles Zinc finger TRAF-type profile. 222 269 IPR001293 GO:0008270
Rops8g03606 538 MobiDBLite consensus disorder prediction 386 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03606 Rops-Chr8 76147393 76150962 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03606 - - gmx:100799182 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03606 8 76147393 76150962 Rops8g03606 8 76147393 76150962 ECH
Rops8g03606 8 76147393 76150962 Rops6g00735 6 18882067 18887492 PCT