Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00735 ATGGAGCTGCCTACAATCAATGTGGACCTTGGGCCAGAGAAGATTGAAGATGAGAAAGAGGGAGGTCCCTTGTTCCATTGTGATCTATGTGATGCAGTAGTAGTTCACAAGCTGGCTCAAATGTTCCTGCCAGGATTAGCCTCTGCTTGTGTTGACAACACAACAGGAGATCCCTTCAAAGCTCCTGGTTCAGTGGCTGTTGATTTGAGGAAGGAAATGATAGATTTCCTTACCCAGAGAAGTGAATCGTTTGTTGCTGAGTCTGTTATCTTAGAAGGGGGTCCGGATGGTGAACTATCGGATCATCCTTTCGGTATTATTTCTCATTTTGTTGATGCATTTGTAGATTCGAAGAGGAATTTGTTAAGTCAGGTTTCAGGATGGCTGCTGAGTGATAAGAGAGAAGACAAAATAGATGATTTCGCTCAAGAGATGGAAATGAATGGTTTTTGGCCTCTAGATAGAAGAGAGACAATTGCAGAAACTTTGCTTAAGAATGTTGACTTCAAGAACTCATTTCATTGCAGCATGAATTTTAATTCTGCTGAAGATCTTGCCAACCATGTTGATCATTGCAACTTCAGACCTATGCTCTGCCAAAATGAGGGATGCAATTCCAAATTTAGTGCAGGTCATTTGCAGGAGCATGATTCAACTTGTCCTTTTAAGATAATTCCGTGTGAACAGAAGTGTACAGATAGCATTATGAGACGTGAGATGGATAGGCACTGCATAACTGTTTGTCCAATGAAGCTTGTGAATTGTCCTTTCTATGCTGTGGGTTGTCGATCTGCTATTGCAAAATGTATGATTGAAAAACATTGTTCAGATGAACTTCATTCTCACTTATTGCACATACTTAAAGGCATCCACAAGGAAGCATCTGGTGAAGATCTGAGACGGCGAGTAGAGCAAATTGTACAGGCATCATCAAGCATCAGGTTAGCGGGGGCTCACAATGTGAGGTCTTTACAACTTATTGTCAAAGATCTTGAAGCTAAGCTAGGGCCTTTGTTAGTGAGCAAGGAGAAAACTAGTGCAGAACCAGTTGCCAAGAATGAAGATAGTGAAGATAGTAGCACCAATACAAAGGGCAGTGAGCAGAGCAAACAAGCTTTAAATTCATCAGATGAAGCTGAGAATAGTGCTGAGAATGCTGTGAATAATGAAGATAGTGAACATAAGGAAGATGGAAAGTAA 1200 0.4108 MELPTINVDLGPEKIEDEKEGGPLFHCDLCDAVVVHKLAQMFLPGLASACVDNTTGDPFKAPGSVAVDLRKEMIDFLTQRSESFVAESVILEGGPDGELSDHPFGIISHFVDAFVDSKRNLLSQVSGWLLSDKREDKIDDFAQEMEMNGFWPLDRRETIAETLLKNVDFKNSFHCSMNFNSAEDLANHVDHCNFRPMLCQNEGCNSKFSAGHLQEHDSTCPFKIIPCEQKCTDSIMRREMDRHCITVCPMKLVNCPFYAVGCRSAIAKCMIEKHCSDELHSHLLHILKGIHKEASGEDLRRRVEQIVQASSSIRLAGAHNVRSLQLIVKDLEAKLGPLLVSKEKTSAEPVAKNEDSEDSSTNTKGSEQSKQALNSSDEAENSAENAVNNEDSEHKEDGK* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00735 399 MobiDBLite consensus disorder prediction 347 361 - -
Rops6g00735 399 MobiDBLite consensus disorder prediction 362 386 - -
Rops6g00735 399 MobiDBLite consensus disorder prediction 344 399 - -
Rops6g00735 399 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 24 377 - -
Rops6g00735 399 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Rops6g00735 399 SUPERFAMILY TRAF domain-like 203 287 - -
Rops6g00735 399 SUPERFAMILY TRAF domain-like 183 226 - -
Rops6g00735 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 218 IPR013083 -
Rops6g00735 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 280 IPR013083 -
Rops6g00735 399 ProSiteProfiles Zinc finger TRAF-type profile. 216 263 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00735 Rops-Chr6 18882067 18887492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00735 - - gmx:100802183 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00735 6 18882067 18887492 Rops6g00735 6 18882067 18887492 ECH
Rops8g03606 8 76147393 76150962 Rops6g00735 6 18882067 18887492 PCT