Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03542 ATGGATGGTCCTTACATTCTCTTTATACTCTCTGTTCTGTCTCTGGTTGCGTTCACTTCTTCCAACACCATTACTCTTCCACTTTCCCCTTTATTCACCAAATCCCCATCTTCAGATCTATTTCAGACTCTCAAGGTAGCAGCTTCTGCTTCACTAACAAGGGCCCACCATCTCAAACACCGCAAATCTTCTTCTCTCGTCAATACCCCAGTTTTTGCCAAAAGCTATGGAGGATACTCTATAGATCTTAAATTCGGAACCCCTCCTCAAACCTCATCTTTTGTTTTGGACACTGGAAGCAGTCTTGTTTGGTTTCCATGCACCTCTCGCTATCTCTGTTCTCGTTGTAACTTCCCAAATATTGACCCAACAAAAATCCCAGTCTTCATTCCCAAGAATTCATCTTCCTCCAAAATTGTGGGTTGTAGAAACCCCAAATGTGGGTGGTTTTTTGGCCCTGACGTTGAATCTAGATGCCAAGGATGCAAACCCGAAGCTCAGAATTGTACCCGGAGTTGTCCTCCTTACATTATTCAATACGGGTTAGGCTCAACAGCGGGTTTGTTACTCTTGGAAAATCTCGACTTTCCGGGAAAAATCGTAACCGATTTTCTCGTAGGTTGTTCCATCCTTTCGATCCGACAACCCTCCGGGATTGCTGGGTTTGGACGAGGAAGAGAGTCTCTGCCAAAGCAAATGGGTCTCAAGAGATTCTCTTACTGTCTTCTCTCTCACCGGTTCGATGACTCGCCGGAAAACAGTGACCTCATTTTGCAGATTGGCTCCACCGGCGGCACCAAGACCAATGGCCTCAGCTACACGCCGTTTCACCCAAATCCATCTACGAACAACTCCGCATTCCTCGAGTATTACTACGTGACACTTCGGAAGGTCCTCGTCGGCGGCGAGAGGGTCAAGATTCCGTTCAAGTTTCTGGAGCCAAGTTCCGACGGGGATGGTGGTACCATAGTGGACTCTGGCTCCACGTTCACCTTTATGGAAAGACCCATCTTTGATTTGGTTTCACGAGAGTTCGAGAAACAACTCGCCAATTTCACGAGAGCAAAGGACATTGAAAAACGATCTGGTTTGAGTCCATGTTTCGATTTCTCCGGCGTCAAAACGGTGCCGTTTCCAGAATTGACTTTCCAATTCAAAGGCGGCGCCAAAATGAAATTGCCTGTTGCGAATTATTTCTCGTTGGTCGGAGATTCCGATGTTCTGTGTTTGACCATTGTCTCCGATGGAACTTCCGGTACGGCGAGGAATGGCGGTCCGGCGATCATCTTGGGGAACTATCAGACGCAGAATTTCTACGTTGAATATGATTTGGAAAATGAGAGGTTCGGATTTAAGCCTCAGAGTTGCAAAAGGAGTGCTTAG 1383 0.4678 MDGPYILFILSVLSLVAFTSSNTITLPLSPLFTKSPSSDLFQTLKVAASASLTRAHHLKHRKSSSLVNTPVFAKSYGGYSIDLKFGTPPQTSSFVLDTGSSLVWFPCTSRYLCSRCNFPNIDPTKIPVFIPKNSSSSKIVGCRNPKCGWFFGPDVESRCQGCKPEAQNCTRSCPPYIIQYGLGSTAGLLLLENLDFPGKIVTDFLVGCSILSIRQPSGIAGFGRGRESLPKQMGLKRFSYCLLSHRFDDSPENSDLILQIGSTGGTKTNGLSYTPFHPNPSTNNSAFLEYYYVTLRKVLVGGERVKIPFKFLEPSSDGDGGTIVDSGSTFTFMERPIFDLVSREFEKQLANFTRAKDIEKRSGLSPCFDFSGVKTVPFPELTFQFKGGAKMKLPVANYFSLVGDSDVLCLTIVSDGTSGTARNGGPAIILGNYQTQNFYVEYDLENERFGFKPQSCKRSA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03542 460 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 94 105 IPR001969 GO:0004190|GO:0006508
Rops8g03542 460 Pfam Xylanase inhibitor N-terminal 79 248 IPR032861 -
Rops8g03542 460 PANTHER OS07G0603500 PROTEIN-RELATED 29 456 - -
Rops8g03542 460 FunFam Aspartic proteinase nepenthesin-2 55 256 - -
Rops8g03542 460 Gene3D Acid Proteases 61 254 IPR021109 -
Rops8g03542 460 CDD pepsin_A_like_plant 78 456 IPR034161 -
Rops8g03542 460 Gene3D Acid Proteases 261 460 IPR021109 -
Rops8g03542 460 ProSiteProfiles Peptidase family A1 domain profile. 79 452 IPR033121 -
Rops8g03542 460 PRINTS Pepsin (A1) aspartic protease family signature 428 443 IPR001461 GO:0004190|GO:0006508
Rops8g03542 460 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Rops8g03542 460 PRINTS Pepsin (A1) aspartic protease family signature 322 333 IPR001461 GO:0004190|GO:0006508
Rops8g03542 460 FunFam Aspartyl protease family protein 262 459 - -
Rops8g03542 460 SUPERFAMILY Acid proteases 74 456 IPR021109 -
Rops8g03542 460 Pfam Xylanase inhibitor C-terminal 291 452 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03542 Rops-Chr8 75251747 75253403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03542 77 458 Miscellaneous Gene Families AT1G44130 24.146 1.03e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03542 - - gmx:100805927 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03542 8 75251747 75253403 Rops8g03542 8 75251747 75253403 ECH
Rops8g03542 8 75251747 75253403 Rops6g00812 6 20798294 20800208 PCT