Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00812 ATGACTTCACCCCACATTTTCCATCTCCTCTTTCTCCTCTCCATCATCACCTTCACTTCATCTTCATCATCTTCCCAAACCATTACCATTCCAATTTCTCCATTGTTCACCAAACACCCTTCTTCAGACCCATTTCAAACCCTCAAGCTCGTTGCTTCTGCTTCAATCACCAGAGCCCACCATATCAAAAATCACCACAGATCTCACCATAATTATTCTTCTCCTCCCCTCGTGAAGACCCAAGTTCATCCCAAAAGTTACGGAGGTTACTCCATTGATCTCAAATTTGGAACCCCACCACAAACCTTCCCTTTTGTTCTAGACACTGGAAGCAGCCTCGTTTGGCTCCCTTGTTCCTCTCATTACCTTTGTTCCAAATGTAACACCTTCCCAAACATAACCAACGTCCCAAAATTCATCCCCAAAAACTCCACCTCTTCAAAATTCATAGGTTGTAAAAACCCTAAATGCGCTTGGGTTTTTGGCCCCAACGTTGAATCACGTTGCCAATCCCAAATTTGCCCTGCTTATACGATCCAATATGGAATGGGCTCAACCGCGGGTTTCTTACTCTCGGAAAATCTCAACTTTCCCGGGAAAATCGTCACTGATTTTCTCGTCGGGTGTTCAATAATGTCAATTTACCAACCCGCCGGAATCGCTGGGTTTGGCCGTGGACCGGAATCGGTGCCATCGCAGATGAACCTCAAGAGATTCTCTCACTGCTTGGTTTCTCACAAATTCGATGACTCGCCGGAGAGAAGCGATCTCGTTTTGTACAATTTCGCCGGCGACGAGAAAACCAACGGTCTGAACTACACGCCGTTTCGGAAAAACCCTAAATCGGAAAACCCAGTATTGAGAACTTACTATTACGTTACTCTCCGAAAAATAATCGTCGGGGAGAAACGGGTTAAGATTCCGGGTCGGTTTTTTGAACCGGATTTTAACGGTAACGGTGGGTCCATATTGGACTCTGGGTCCACCTTCACGTTCATGGAGAGGCCCATTTATGATTTGGTGGCCCAAGAGTTTGAGAAGCAAGTGAATTACACGAGGGTTAGGGTAGCTGAGGAACAATCTGGGTTGAGTCCTTGCTTTAATATGTCCGGGGGTGACACGGCGTCGTTTCCGGGACTGATTTTTCAGTTTAAGGGTGGTGCTAAAATGACGCTGCCGTTGACGAATTATTTCTCGTTGGTTGGGGAATCTGACGTGGCGTGCTTGACGATCGTGTCTGATGACGTGGCCCGTTCAGGGGTGAGTGGACCGGCTGTTATATTAGGGAATTATCAGCAGCAGAATTTCCACGTGGAATATGACTTGGAAAATGAGAGGTTTGGGTTTCGGAGTCAGAGTTGCAAAAACAGTGTTTAG 1377 0.4648 MTSPHIFHLLFLLSIITFTSSSSSSQTITIPISPLFTKHPSSDPFQTLKLVASASITRAHHIKNHHRSHHNYSSPPLVKTQVHPKSYGGYSIDLKFGTPPQTFPFVLDTGSSLVWLPCSSHYLCSKCNTFPNITNVPKFIPKNSTSSKFIGCKNPKCAWVFGPNVESRCQSQICPAYTIQYGMGSTAGFLLSENLNFPGKIVTDFLVGCSIMSIYQPAGIAGFGRGPESVPSQMNLKRFSHCLVSHKFDDSPERSDLVLYNFAGDEKTNGLNYTPFRKNPKSENPVLRTYYYVTLRKIIVGEKRVKIPGRFFEPDFNGNGGSILDSGSTFTFMERPIYDLVAQEFEKQVNYTRVRVAEEQSGLSPCFNMSGGDTASFPGLIFQFKGGAKMTLPLTNYFSLVGESDVACLTIVSDDVARSGVSGPAVILGNYQQQNFHVEYDLENERFGFRSQSCKNSV* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00812 458 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 105 116 IPR001969 GO:0004190|GO:0006508
Rops6g00812 458 PRINTS Pepsin (A1) aspartic protease family signature 96 116 IPR001461 GO:0004190|GO:0006508
Rops6g00812 458 PRINTS Pepsin (A1) aspartic protease family signature 322 333 IPR001461 GO:0004190|GO:0006508
Rops6g00812 458 PRINTS Pepsin (A1) aspartic protease family signature 426 441 IPR001461 GO:0004190|GO:0006508
Rops6g00812 458 PANTHER OS07G0603500 PROTEIN-RELATED 37 454 - -
Rops6g00812 458 CDD pepsin_A_like_plant 89 454 IPR034161 -
Rops6g00812 458 Gene3D Acid Proteases 63 251 IPR021109 -
Rops6g00812 458 SUPERFAMILY Acid proteases 86 454 IPR021109 -
Rops6g00812 458 Gene3D Acid Proteases 260 458 IPR021109 -
Rops6g00812 458 FunFam Aspartyl protease family protein 263 457 - -
Rops6g00812 458 ProSiteProfiles Peptidase family A1 domain profile. 90 450 IPR033121 -
Rops6g00812 458 Pfam Xylanase inhibitor N-terminal 90 247 IPR032861 -
Rops6g00812 458 Pfam Xylanase inhibitor C-terminal 291 450 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00812 Rops-Chr6 20798294 20800208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00812 88 454 Miscellaneous Gene Families AT1G44130 24.041 1.03e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00812 - - gmx:100808552 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00812 6 20798294 20800208 Rops6g00812 6 20798294 20800208 ECH
Rops8g03542 8 75251747 75253403 Rops6g00812 6 20798294 20800208 PCT