Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03405 ATGCGGGGTTGTGTTCCCCTGTTGCTGGCCTTAGCCACCGTGGTGATGCCGGCGACGGTGGTCTACGGCGGTAGTTATCTTCCTCTGGAACGTGCTATTCCTCTGAACCAGCGTGTGGAACTGGAGGCACTGAGAGCTCGCGACAGAGCCCGACATGGTCGAATCTTACAAGGTACGGTTGGTGGCATTGTCGACTTTTCAGTTCAAGGAACCTCCGATCCTTACTTCGTTGGGTACGGGTTGTATTTCACGAAAGTGAAGATGGGATCTCCTGCAAAAGAATTTTATGTTCAGATTGACACTGGAAGTGACATCTTGTGGTTTAATTGCAATACTTGCAGTAATTGCCCACAATCTAGTGGATTAGGGATTGAGCTGAATATCTTTGACACATCAAGCTCATCCACTGCTTCATTGGTTTACTGCTCGGACCCAATTTGTTCTTATGCCGTTCAAACTACTACAAGTGAATGCTCTTCTCAGGTTAATCAGTGCAGCTATACCTTTCAGTATGGGGATGGAAGTGGGACATCTGGTTATTATGTTTCTGATATGATGCACTTTGACACAATCCTGGGACAGGCTATGTTTTCTAACTCATCATCTAATATTGTTTTTGGGTGTAGCACCTATCAGTCTGGGGATTTGACCAAGACAGATAAAGCAGTAGATGGAATTTTTGGGTTTGGCCCCGGTGCTTTATCTGTTATATCACAATTGTCATCACAAGGCATAACACCCAAAGTGTTCTCTCATTGCTTAAAAGGAGAGGGTAATGGAGGAGGCATACTTGTTCTCGGTGAAATTTTAGAGCCAAATATTGTTTATAGTCCACTTGTCGCATCACAGCCTCATTACAATTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTTCTCTCAATTGATCCAGACGTATTTGCAACATCGAACAATCGAGGAACTATCGTTGATTCTGGAACAACATTAGCATACCTTGTTCAAGAAGCCTATGATCCTTTTGTCAATGCTATAACTACCGCTGTGTCACAGTTTTCCAGACCTATTATTTCAAAAGGAAACCAGTGTTATCTGGTCCCAACCAGCTTAGGTGATATATTTCCTCCAGTCAGTTTAAATTTTATGGGTGGAGCATCCATGGTTTTAAAACCAGAACAGTATCTTATGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATCGGTTTCCAGAAAGTGCAGGAGGGGTTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATTTTTGTGTATGACTTAGCTAATCAACGAATTGGGTGGGCCAACTATGATTGTTCCTTGGCTGTAAATGTCTCTTTGGCTACAAGCAAGAGCAAGGATGCATACATGAATGCAGGACAGATGAGTGTCAGTTGTTCCCACATAATCATTCTCTCCAAGTTGCGACCTTTAAGCATTGCAGTTTTTCTTGTGCACATTATAGTTTTCATGGAGTCCCAATATTTGTAA 1494 0.425 MRGCVPLLLALATVVMPATVVYGGSYLPLERAIPLNQRVELEALRARDRARHGRILQGTVGGIVDFSVQGTSDPYFVGYGLYFTKVKMGSPAKEFYVQIDTGSDILWFNCNTCSNCPQSSGLGIELNIFDTSSSSTASLVYCSDPICSYAVQTTTSECSSQVNQCSYTFQYGDGSGTSGYYVSDMMHFDTILGQAMFSNSSSNIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSQGITPKVFSHCLKGEGNGGGILVLGEILEPNIVYSPLVASQPHYNLNLQSIAVNGQLLSIDPDVFATSNNRGTIVDSGTTLAYLVQEAYDPFVNAITTAVSQFSRPIISKGNQCYLVPTSLGDIFPPVSLNFMGGASMVLKPEQYLMHYGFLDGAAMWCIGFQKVQEGFTILGDLVLKDKIFVYDLANQRIGWANYDCSLAVNVSLATSKSKDAYMNAGQMSVSCSHIIILSKLRPLSIAVFLVHIIVFMESQYL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03405 497 Gene3D Acid Proteases 66 268 IPR021109 -
Rops8g03405 497 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Rops8g03405 497 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Rops8g03405 497 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Rops8g03405 497 Gene3D Acid Proteases 269 446 IPR021109 -
Rops8g03405 497 SUPERFAMILY Acid proteases 77 442 IPR021109 -
Rops8g03405 497 Pfam Xylanase inhibitor C-terminal 285 436 IPR032799 -
Rops8g03405 497 ProSiteProfiles Peptidase family A1 domain profile. 82 436 IPR033121 -
Rops8g03405 497 FunFam Aspartic proteinase-like protein 2 269 447 - -
Rops8g03405 497 CDD pepsin_A_like_plant 82 440 IPR034161 -
Rops8g03405 497 FunFam Aspartic proteinase-like protein 2 63 268 - -
Rops8g03405 497 PANTHER ASPARTYL PROTEASES 27 434 IPR001461 GO:0004190|GO:0006508
Rops8g03405 497 Pfam Xylanase inhibitor N-terminal 82 267 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03405 Rops-Chr8 73118629 73123798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03405 80 441 Miscellaneous Gene Families AT1G44130 27.083 7.59e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03405 - - gmx:100804147 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03405 8 73118629 73123798 Rops8g03405 8 73118629 73123798 ECH
Rops8g03405 8 73118629 73123798 Rops6g00946 6 22875934 22880925 PCT