Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00946 ATGCGGTGTTTTATCCCGACGTTGTTGGGTATAGCCACCGTGTTGGTGTCGGCGGTGTACAGCGGTTTCCTCCCTCTGGAACGTGGCATTCCGTTGAGCCAGCGCGTGGAGATGGACGCGCTTAGAGCACGTGACAGAGCACGACACGCTCGAATCTTACGAGGTGTTGTTGGTGGTGGTATTGTAGATTTCTCAGTTCAAGGGACCTCCGATCCATACTCCGTTGGGTACGGGTTGTATTTTACCAAAGTGAAGATGGGATCTCCTCCAAGGGAATTTAATGTCCAAATTGATACAGGAAGTGACATTTTGTGGGTTAATTGCAATACTTGCAGTAATTGTCCTCAATCTAGTGGACTTGGGATTGAGCTCAATTTCTTTGACACGGTTGGCTCATCCTCAGCTGTGCTGATTCCCTGCTCGGATCCGATATGCACTTCCGGGGTTCAAGGTGCAGCTGCCGAATGCTCCCCTCAGGTTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGGAGTGGGACATCGGGCTATTATGTTTATGATTCTATGTATTTTGACTTGATCATGGGACAGTCTCCACCGGCTAACTCTTCAGCTACCATTGTTTTTGGGTGTAGCACCTATCAGTCTGGCGATTTGACTAAGACAGATAAAGCAGTTGATGGGATTTTTGGGTTTGGTCCTGGTGCTCTATCTGTTGTATCACAATTATCATCACGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAAGGAGATGGCAATGGAGGAGGCATACTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGGCAACTCCTCTCAATTAATCCAGCTGTATTTGCAACATCTAACAACAGAGGAACTATAGTTGATTGTGGTACCACGTTGGCATATCTTATTCAAGAAGCTTATGATCCTCTTGTCAATGCGATAACTACCGCTGTGTCACAATCTGCCAGTCCCATTATTTCAAAAGGAAACCAGTGTTATCTGGTCTCAACCAGTATTGGTGATATTTTTCCTCCAGTCAGTTTAAACTTTGCGGGTGGAGCATCAATGGTTTTAAAACCAGAACAGTACCTTATGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATAGGTTTCCAAAAAGTGCAGGAGGGAGTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTCTATGACTTAGCTCATCAACGAATTGGATGGGCTAACTATGATTGTTCCATGTCTGTGAATGTCTCCGTGACTACGAGCAAGGATGAGTACATCAATGCAGGACAACTGCATGTCAGCAGCTCAGAGAAAAGCATTCTCTCCAAGTTACGACTACCTGTAAGCATTGTGGCTCTCTCTATGCACATAGTAATCTTCATGAAGTTCCCATTTTTGTAA 1485 0.4431 MRCFIPTLLGIATVLVSAVYSGFLPLERGIPLSQRVEMDALRARDRARHARILRGVVGGGIVDFSVQGTSDPYSVGYGLYFTKVKMGSPPREFNVQIDTGSDILWVNCNTCSNCPQSSGLGIELNFFDTVGSSSAVLIPCSDPICTSGVQGAAAECSPQVNQCSYTFQYGDGSGTSGYYVYDSMYFDLIMGQSPPANSSATIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVVSQLSSRGITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLSINPAVFATSNNRGTIVDCGTTLAYLIQEAYDPLVNAITTAVSQSASPIISKGNQCYLVSTSIGDIFPPVSLNFAGGASMVLKPEQYLMHYGFLDGAAMWCIGFQKVQEGVTILGDLVLKDKIVVYDLAHQRIGWANYDCSMSVNVSVTTSKDEYINAGQLHVSSSEKSILSKLRLPVSIVALSMHIVIFMKFPFL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00946 494 FunFam Aspartic proteinase-like protein 2 61 266 - -
Rops6g00946 494 Pfam Xylanase inhibitor C-terminal 283 434 IPR032799 -
Rops6g00946 494 Pfam Xylanase inhibitor N-terminal 80 265 IPR032861 -
Rops6g00946 494 Gene3D Acid Proteases 267 445 IPR021109 -
Rops6g00946 494 FunFam Aspartic proteinase-like protein 2 267 445 - -
Rops6g00946 494 Gene3D Acid Proteases 64 266 IPR021109 -
Rops6g00946 494 PANTHER ASPARTYL PROTEASES 31 432 IPR001461 GO:0004190|GO:0006508
Rops6g00946 494 CDD pepsin_A_like_plant 80 438 IPR034161 -
Rops6g00946 494 ProSiteProfiles Peptidase family A1 domain profile. 80 434 IPR033121 -
Rops6g00946 494 SUPERFAMILY Acid proteases 75 442 IPR021109 -
Rops6g00946 494 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Rops6g00946 494 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190|GO:0006508
Rops6g00946 494 PRINTS Pepsin (A1) aspartic protease family signature 410 425 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00946 Rops-Chr6 22875934 22880925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00946 78 439 Miscellaneous Gene Families AT1G44130 28.756 7.11e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00946 - - gmx:100820394 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00946 6 22875934 22880925 Rops6g00946 6 22875934 22880925 ECH
Rops8g03405 8 73118629 73123798 Rops6g00946 6 22875934 22880925 PCT