Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03279 ATGGGTTCAGTAGAAAGATCAAAGAAGAAAACTCATTTATGGAAGAAAGCCATGCTCCATTTTTCTCTTTGTTTTGTGATGGGGTTCTTCACTGGCTTAGCTCCAACAGGTAAATCTTCTCTCTTTTCTAGCAAAGTTGCAGTTTCAAATGGAACAGAATCTGCACCACAACCTGCTGTGACAACAAATGTCAATAGAAGTTGGATAGCTCCAGCACCAATGACCTTGCCCACAAGGCCTAAAGTCCAAGGACAAAAGACATCAACAACAACAAAATTGCATGTAAAACAACTGCCCCAGTTGAAGCCTAGAAAACTTTTGATCATTGTTACTCCAACAAGCACAAAACTTCCCTACCAAGCAGTGTTTTTGAGAAGGTTGGCAAATACTATAAAGCTGGTTCCTCAACCATTGCTTTGGATTGTTGTGGAAGCCAAAACTGATTCTACAGATTTGTCAGAGATACTAAGGAAGACTGGCATCATGTATAGGCATGTGGTTTTCAAGGAAAACTTCACAGACTTGGACGCTGAACTGAATCATCAAAGAAATCTTGCACTTAAGCACATCGAACATCATAGGCTGAACGGGATTGTACACTTTGCTGGGCTTTCCAATGTTTATGATCTCCAATTCTTCCAACAGCTTAGAGATATTGAGGTCTTTGGAACATGGCCAACGGCATTGTTAGCTGCAAATAGGAAGAAAGTGATAATTGAAGGACCAGTATGTGATTCATCTCAAGTCATTGGTTGGCATCTAAGGAATATGAACAATGATACTGTTACTCCTCCCATTCATATTTCAAGTTTTGCATTCAATAGCTCCATTCTCTGGGACCCTGAGAGATGGGGTCGCACTTCCTCAGTTCAAGACACCTCTCAGAATTCAATCAAGTTCGTGAAGCAAGTAGTTCTAGAAGATGAGGCTAAGTTAAAGGGAATTCCACCAGGGGACTGCTCCAAAATCATGCTATGGCGTTTCAATTTTCATGCCCGGACCATTTCAAAGCACTAA 1017 0.41 MGSVERSKKKTHLWKKAMLHFSLCFVMGFFTGLAPTGKSSLFSSKVAVSNGTESAPQPAVTTNVNRSWIAPAPMTLPTRPKVQGQKTSTTTKLHVKQLPQLKPRKLLIIVTPTSTKLPYQAVFLRRLANTIKLVPQPLLWIVVEAKTDSTDLSEILRKTGIMYRHVVFKENFTDLDAELNHQRNLALKHIEHHRLNGIVHFAGLSNVYDLQFFQQLRDIEVFGTWPTALLAANRKKVIIEGPVCDSSQVIGWHLRNMNNDTVTPPIHISSFAFNSSILWDPERWGRTSSVQDTSQNSIKFVKQVVLEDEAKLKGIPPGDCSKIMLWRFNFHARTISKH* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03279 338 FunFam Glycosyltransferases 105 338 - -
Rops8g03279 338 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 12 331 IPR005027 GO:0015018|GO:0016020
Rops8g03279 338 Pfam Glycosyltransferase family 43 127 329 IPR005027 GO:0015018|GO:0016020
Rops8g03279 338 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 104 338 IPR029044 -
Rops8g03279 338 SUPERFAMILY Nucleotide-diphospho-sugar transferases 106 334 IPR029044 -
Rops8g03279 338 CDD GlcAT-I 105 330 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03279 Rops-Chr8 71350740 71351426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03279 1 334 Glycosyltransferase AT2G37090 61.538 5.40e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03279 K20869 - gmx:100785607 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03279 8 71350740 71351426 Rops8g03279 8 71350740 71351426 ECH
Rops8g03279 8 71350740 71351426 Rops6g01068 6 25121638 25122357 PCT