Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03235 ATGATGAAGAAACAATTGACAGGATTAAGGGGTGATTCTCCCCTTCACTCTGCAATCCGAGCCGGAAATTTAGAATTGGTGCGTGAAATCATCTCTGAGAATCGAGATGAAGGATTAAAGGAGTTGCTTTCAAAGAAAAATAACTCTGGTGAAACTGCCTTATATGTTGCTGCTGAAAGTGGTCATCTTGATATAGTGAAGGAATTGATCACATACCATGATATTGGGTTGGCCAGCTTGAAAGCTAGAAATGGATTCGATGCATTCCATGTTGCTGCTAAAAATGGAAACTTGGAGATATTGAAGGTCCTTATGGAAGCCATTCCTGAAATTTCAATGACTGTTGATCTGTCTAACACTACTGCATTGCACACTGCTGCAGCACAAGGACATATTCATGTAGTAAATTTTCTCTTGGAAAGAGGCAGTAGCCTGGTAACTATTGCAAAAAGCAACGGGAAAACTGTGTTGCATTCTGCTGCAAGAAATGGCCACGTGGAGGTCATCAAGGCCCTTCTAAGCAGAGGACCTGAAATTGCAACGAGAATTGATAAGAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAAAATCTTGAGTTGGTGGATGAGCTTTTGAAATTGAATCCATCTTTGGCTAATATGGTGGATGCCAAGGGAAACACTGCACTGCATATAGCAACCCGGAAGGGTCGTCTACAGATTGTTCAGAAGCTACTAGATTGCAGAGAAATAGACACAAATGTTATTAGTAAATCTGGGGAAACTGCTTTGGATACTGCAGAGAGAAATGGTCACTTGGACATTGCCAACTTTCTGCAAGTCCATGGAGCTCAAAATGCTAGGTCCATCAAGTCACCTACTGCAAACCCAGCTCTTGAACTCAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACATTTAAAACACAAAGACGTATGAAAGGCATAGCAAAGCGAATTAACAAGATGCATGCTGAGGGTCTTAACAATGCAATTAACTCCAATACTGTTGTTGCTGTCCTTATTGCAACAGTTGCTTTTGCTGCCATATTTCAAGTACCAGGCCAGTATCCTGAAAACTCAACGAACCTTGCTCCTGAAATGTCTCCTGGGGAAGCAAATATTGCTCCCAGAATTGAATTCATGATATTCATTATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGGTTGTCCAAACATCATTGGTTGTTATTGAGAGGAAAGCAAAGAAACAAATGACAGCAGTTATGAATAAGTTGATGTGGATAGCTTGTGTGCTAATTTCTGTGGCATTCCTTGCAATGTCATACATAATTGTAGGGGATCATATAGAGTTGGCTATAGCAGCCACAGCTCTAGGAACAGTTATCATGGCAGCAACTCTGGGAACACTCTGTTATTGGGTGATTGCTCATCGCCTTGAGGCCTCAAGAATGCGAAGTCTGAGGACAATGACGAGTAGTAGACAGTCATTGTCTATGTCAATGATGTCAGGTTCAGAGAATGAGTATAATAAGACGGTGTATGCAATATAA 1569 0.4143 MMKKQLTGLRGDSPLHSAIRAGNLELVREIISENRDEGLKELLSKKNNSGETALYVAAESGHLDIVKELITYHDIGLASLKARNGFDAFHVAAKNGNLEILKVLMEAIPEISMTVDLSNTTALHTAAAQGHIHVVNFLLERGSSLVTIAKSNGKTVLHSAARNGHVEVIKALLSRGPEIATRIDKKGQTALHMAVKGQNLELVDELLKLNPSLANMVDAKGNTALHIATRKGRLQIVQKLLDCREIDTNVISKSGETALDTAERNGHLDIANFLQVHGAQNARSIKSPTANPALELKRTVSDIKSGVHNQLEHTFKTQRRMKGIAKRINKMHAEGLNNAINSNTVVAVLIATVAFAAIFQVPGQYPENSTNLAPEMSPGEANIAPRIEFMIFIIFDSTALFISLAVVVVQTSLVVIERKAKKQMTAVMNKLMWIACVLISVAFLAMSYIIVGDHIELAIAATALGTVIMAATLGTLCYWVIAHRLEASRMRSLRTMTSSRQSLSMSMMSGSENEYNKTVYAI* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03235 522 PRINTS Ankyrin repeat signature 168 182 IPR002110 GO:0005515
Rops8g03235 522 PRINTS Ankyrin repeat signature 50 65 IPR002110 GO:0005515
Rops8g03235 522 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Rops8g03235 522 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Rops8g03235 522 ProSiteProfiles Ankyrin repeat region circular profile. 186 208 - -
Rops8g03235 522 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Rops8g03235 522 Pfam Ankyrin repeats (3 copies) 10 75 IPR002110 GO:0005515
Rops8g03235 522 Pfam Ankyrin repeats (3 copies) 217 279 IPR002110 GO:0005515
Rops8g03235 522 Pfam Ankyrin repeats (3 copies) 81 145 IPR002110 GO:0005515
Rops8g03235 522 Pfam Ankyrin repeats (3 copies) 152 208 IPR002110 GO:0005515
Rops8g03235 522 ProSiteProfiles Ankyrin repeat profile. 10 42 IPR002110 GO:0005515
Rops8g03235 522 SMART ANK_2a 84 113 IPR002110 GO:0005515
Rops8g03235 522 SMART ANK_2a 254 284 IPR002110 GO:0005515
Rops8g03235 522 SMART ANK_2a 186 215 IPR002110 GO:0005515
Rops8g03235 522 SMART ANK_2a 49 77 IPR002110 GO:0005515
Rops8g03235 522 SMART ANK_2a 220 250 IPR002110 GO:0005515
Rops8g03235 522 SMART ANK_2a 10 39 IPR002110 GO:0005515
Rops8g03235 522 SMART ANK_2a 152 181 IPR002110 GO:0005515
Rops8g03235 522 SMART ANK_2a 118 148 IPR002110 GO:0005515
Rops8g03235 522 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Rops8g03235 522 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Rops8g03235 522 ProSiteProfiles Ankyrin repeat region circular profile. 10 36 - -
Rops8g03235 522 ProSiteProfiles Ankyrin repeat region circular profile. 49 70 - -
Rops8g03235 522 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10 506 - -
Rops8g03235 522 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Rops8g03235 522 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Rops8g03235 522 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Rops8g03235 522 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Rops8g03235 522 Gene3D - 5 109 IPR036770 -
Rops8g03235 522 ProSiteProfiles Ankyrin repeat profile. 49 70 IPR002110 GO:0005515
Rops8g03235 522 Gene3D - 110 282 IPR036770 -
Rops8g03235 522 Pfam Domain of unknown function 334 449 IPR026961 -
Rops8g03235 522 ProSiteProfiles Ankyrin repeat profile. 186 208 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03235 Rops-Chr8 70818641 70822165 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03235 2 522 Miscellaneous Gene Families AT1G07710 63.188 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03235 - - gmx:100802370 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03235 8 70818641 70822165 Rops6g03533 6 60216974 60219977 ECH
Rops8g03235 8 70818641 70822165 Rops8g03235 8 70818641 70822165 ECH