Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03533 ATGGCCTCCCACCTCAACCAACCAGGAGGAGCTCAAATTAGTCAAAGGGAGATAGAAAAAGGAGGAGGAAGCATGACCCCAAAAACCCAGAACCCACTTTCCGAGATATCTCCGTCGCCGTCTCCGTCGTCTGCTACGGCGCCGGCGTTGGTGTTGTCAAACTCAGGGAAGCGGATCGATCAAGCGGGGAAGAAGAAGTACGTGAAGCAAGTGACTGGAAGACACAACGACACGGAGCTTCACCTTGCAGCTCAAAGGGGTGACGTTGGTGCTGTGAAACAGATCCTTCTTGATATTGATTCTCAGATAATGGGGACTTTGAGTGGTGATGATGATGATCTTAACGCTGAGATTGCTGAGGTTCGTGCTTGTGTTGTCAATGAAGAGAATGAGCTTGGTGAGACAGCTTTGTTCACTGCTGCTGAAAGGGGTCACCTTGATGTTGTTAAGGAATTGTTGAAATATTCCACATTTGACACTGTTTCCAAGAAGAACCGATCTGGCTTTGATCCCTTGCATATTGCTGCTAGTCAAGGCCATCATGCTATCGTTCAGGTTTTACTAGATTATGACCCTGGATTAAGCAAAACTATTGGTCCTTCCAATGCCACACCACTCATAACTGCAGCGACGAGAGGGCACACGGCAGTGGTGAATGAACTGCTGTCAAAGGATTGCAGCTTGTTGGAAATTGCTAGATCCAATGGCAAAAATGCGTTGCACTTGGCTGCTCGACAGGGTCATGTAGAGATTGTAAAAGCCTTGCTCAGTAAAGATCCACAATTGGCTCGGAGGACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTGAAAGGGCAGAGTTGTGATGTGGTGAAATTGCTTCTTGATGCAGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGAAACACGGCATTACATGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTAAATGAGTTATTACTTCTTCCAGACACAAACGTTAATGCATTAACCAGAGACCACAAAACGGCGTTTGACATCGCTGAAAATCTTCCCCTCTCTGAAGAGGCGTCAGATATAAAGGATTGCCTTTCTCGGTATGGAGCACTCAGAGCTAATGACCTCAACCAACCAAGGGATGAACTAAGGAAGACTGTTACTCAAATAAAGAAAGATGTTCACACCCAGCTTGAACAAACCAAGAGAACCAACAAAAATGTTCATAATATTTCCAAGGAGCTAAGGAAACTCCACAGGGAGGGAATTAACAATGCCACAAACTCAGTGACGGTGGTGGCTGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACCGTGCCTGGTGGTGATAATGTTGATGGCTCAGGAGTGGTAGCTGCTTATGCTGCTTTTAAAATCTTCTTCATCTTTAATGCTATTGCACTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCTTGGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTGGTAGAGGTGATTAACAAGCTGATGTGGTTGGCTTCTGTATGCACCTCGGTGACATTTATTGCCTCTTCTTACATAGTAGTGGGTAAGCACAATAAGTGGGCTGCAATTCTGGTTACTGTAGTTGGAGGAGTGATAATATCTGGAGTTATTGGCACTATGACTTTCTATGTAGTGAGGTCTAAAAGAAGCAGATCAATGAGGAAGAAGGAGAAGCAGCTAGCCAGAAGGAGTGGATCCAACTCATGGCATCATTCTGAATTCTCTAATTCCGAGGTTGATCGAATTTATGCACTTTGA 1788 0.4457 MASHLNQPGGAQISQREIEKGGGSMTPKTQNPLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVKQILLDIDSQIMGTLSGDDDDLNAEIAEVRACVVNEENELGETALFTAAERGHLDVVKELLKYSTFDTVSKKNRSGFDPLHIAASQGHHAIVQVLLDYDPGLSKTIGPSNATPLITAATRGHTAVVNELLSKDCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLLLPDTNVNALTRDHKTAFDIAENLPLSEEASDIKDCLSRYGALRANDLNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNVDGSGVVAAYAAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVTFIASSYIVVGKHNKWAAILVTVVGGVIISGVIGTMTFYVVRSKRSRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAL* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03533 595 Gene3D - 196 396 IPR036770 -
Rops6g03533 595 ProSiteProfiles Ankyrin repeat region circular profile. 235 258 - -
Rops6g03533 595 ProSiteProfiles Ankyrin repeat profile. 235 267 IPR002110 GO:0005515
Rops6g03533 595 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Rops6g03533 595 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 47 579 - -
Rops6g03533 595 ProSiteProfiles Ankyrin repeat profile. 303 336 IPR002110 GO:0005515
Rops6g03533 595 ProSiteProfiles Ankyrin repeat region circular profile. 167 189 - -
Rops6g03533 595 ProSiteProfiles Ankyrin repeat profile. 167 189 IPR002110 GO:0005515
Rops6g03533 595 MobiDBLite consensus disorder prediction 24 48 - -
Rops6g03533 595 Pfam Ankyrin repeats (3 copies) 267 332 IPR002110 GO:0005515
Rops6g03533 595 Pfam Ankyrin repeats (3 copies) 80 193 IPR002110 GO:0005515
Rops6g03533 595 Pfam Ankyrin repeats (3 copies) 202 260 IPR002110 GO:0005515
Rops6g03533 595 Gene3D - 53 192 IPR036770 -
Rops6g03533 595 SMART ANK_2a 303 333 IPR002110 GO:0005515
Rops6g03533 595 SMART ANK_2a 201 230 IPR002110 GO:0005515
Rops6g03533 595 SMART ANK_2a 167 196 IPR002110 GO:0005515
Rops6g03533 595 SMART ANK_2a 235 264 IPR002110 GO:0005515
Rops6g03533 595 SMART ANK_2a 269 298 IPR002110 GO:0005515
Rops6g03533 595 SMART ANK_2a 75 104 IPR002110 GO:0005515
Rops6g03533 595 SMART ANK_2a 132 163 IPR002110 GO:0005515
Rops6g03533 595 MobiDBLite consensus disorder prediction 1 48 - -
Rops6g03533 595 FunFam Ankyrin repeat-containing protein ITN1 49 193 - -
Rops6g03533 595 Pfam Domain of unknown function 417 523 IPR026961 -
Rops6g03533 595 SUPERFAMILY Ankyrin repeat 80 349 IPR036770 -
Rops6g03533 595 ProSiteProfiles Ankyrin repeat region circular profile. 269 296 - -
Rops6g03533 595 FunFam Ankyrin repeat-containing protein ITN1 isoform A 194 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03533 Rops-Chr6 60216974 60219977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03533 18 595 Miscellaneous Gene Families AT3G12360 80.207 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03533 - - gmx:100777929 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03235 8 70818641 70822165 Rops6g03533 6 60216974 60219977 ECH
Rops6g03533 6 60216974 60219977 Rops6g03533 6 60216974 60219977 ECH