Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03218 ATGAAAACAGAGCTGAAGAAATCCAAGTCTCCATGGCCGAAATTATCCGTGAAGAAATGGCTCAATATAAAGAGCAGTGCTGATACGATTCTCTCAGACTACTCTGTAACAGGAACTGCGACAGAAAGGAGAAAGAGCTATTCAGATCGAGATCGTTACGTCGTCGTTTCAGATGATTTATCGGGGTGGTTGAAGGATTCTAAGAATGGAATGAAACGTTCGGTGTATGGGAAGAAAAAAACAAGTGCTGTCACTGATGGTCTGGACCTTAGGATGTTCGTGGGGACGTGGAATGTCGGAGGGAAGTCACCGAACGAAGGCTTGGACTTGAGAAATTGGCTGACGTCTCCTTCGCCAGCTGACATATATGTGATTGGGTTCCAAGAAATTGTACCCCTAAATGCAGGGAACGTGCTTGGGCCAGAAGACAGTGGCCCAGCAGCGAAGTGGCTGAACCTAATACGACAAGCCTTGAACACCAACAATAACAGTGATGAAGGCAACCGAGAATCCCTCTCTTTAGAAGACGAGTTGGATAATGGAGAAAGCTATAGCTTAGTAGCAAACAAGCAAATGGTTGGTATCTTCTTATCAGTGTGGGTACGAGCGGATCTTCGTAACCATGTTAGCAATATGAAAGTCTCACGCGTTGGCAGAGGCATCATGGGCTATCTTGGAAATAAGGGTTCAACATCAATTAGCATGACATTATACCACACCACGTTCTGCTTCGTTTGCACCCACTTGGCCTCTGGAGAGAAATATGGCGATGAGTTGAGAAGAAACTTGGACGTCTCGGAAATCTTGAAGAAAACTAAATTTTTTCACTCGTTTAAATCCCTTGGTCATCCACTCCCTCCTGAAAGCATACTAGAACATGATAATATTATTTGGCTCGGGGATTTGAATTATCGGCTTGCTGCTGGTTACGATGATACACATGAACTACTAAAGAAGAATAATTGGCAGGCATTACTAGAGAAGGATCAGTTAAGGATAGAACAGAGAGCTGGTCGAGTATTTGAAGGTTGGAATGAAGGGAGCATATACTTTGCTCCCACTTACAAATACTTGACTAATTCTGACCACTATGTCGCCCAAACCTCCAAATCCAAGGAAAAACGACGGACTCCTGCTTGGTGCGATCGAATTTTATGGAAAGGAGAAAGCCTGAATCAGATGTGGTATGTTCGAGGAGAGTCCAAATTCTCAGATCACAGGCCTGTGTATTCACTATTCTCTGTTAAAGTGAACTTGACAAGCAAGAATCTCACTCCCTTAAAAACATTGACAAATGCTGCGTTGTCATCAACTTGCACTGCTAAAGTACAGGCAGAAGAGCAGCTCATGTTACTAACGAGGGCACAAAGTTGCATAGTCACCGCAGCCAGCTTATGA 1398 0.4392 MKTELKKSKSPWPKLSVKKWLNIKSSADTILSDYSVTGTATERRKSYSDRDRYVVVSDDLSGWLKDSKNGMKRSVYGKKKTSAVTDGLDLRMFVGTWNVGGKSPNEGLDLRNWLTSPSPADIYVIGFQEIVPLNAGNVLGPEDSGPAAKWLNLIRQALNTNNNSDEGNRESLSLEDELDNGESYSLVANKQMVGIFLSVWVRADLRNHVSNMKVSRVGRGIMGYLGNKGSTSISMTLYHTTFCFVCTHLASGEKYGDELRRNLDVSEILKKTKFFHSFKSLGHPLPPESILEHDNIIWLGDLNYRLAAGYDDTHELLKKNNWQALLEKDQLRIEQRAGRVFEGWNEGSIYFAPTYKYLTNSDHYVAQTSKSKEKRRTPAWCDRILWKGESLNQMWYVRGESKFSDHRPVYSLFSVKVNLTSKNLTPLKTLTNAALSSTCTAKVQAEEQLMLLTRAQSCIVTAASL* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03218 465 SMART i5p_5 88 421 IPR000300 GO:0016791|GO:0046856
Rops8g03218 465 Gene3D Endonuclease/exonuclease/phosphatase 70 442 IPR036691 -
Rops8g03218 465 Pfam Endonuclease/Exonuclease/phosphatase family 95 406 IPR005135 GO:0003824
Rops8g03218 465 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 17 434 IPR045849 GO:0004445
Rops8g03218 465 FunFam Type I inositol polyphosphate 5-phosphatase 8 71 438 - -
Rops8g03218 465 SUPERFAMILY DNase I-like 83 419 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03218 Rops-Chr8 70403264 70409235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03218 89 417 Acyl Lipid Metabolism Gene Families AT1G65580 31.481 5.93e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03218 - - gmx:100800223 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03218 8 70403264 70409235 Rops6g01123 6 25856567 25860327 PCT